Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BK055_RS18185 Genome accession   NZ_CP017775
Coordinates   3661281..3661970 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain 9912D     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656281..3666970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS18150 (BK055_18150) - 3656479..3656961 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BK055_RS18155 (BK055_18155) flgM 3656976..3657242 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BK055_RS18160 (BK055_18160) - 3657312..3657731 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BK055_RS18165 (BK055_18165) comFC 3657805..3658494 (-) 690 WP_222103466.1 phosphoribosyltransferase family protein Machinery gene
  BK055_RS18170 (BK055_18170) - 3658500..3658784 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BK055_RS18175 (BK055_18175) comFA 3658842..3660227 (-) 1386 WP_071182021.1 DEAD/DEAH box helicase Machinery gene
  BK055_RS18180 (BK055_18180) - 3660335..3661183 (-) 849 WP_003151387.1 DegV family protein -
  BK055_RS18185 (BK055_18185) degU 3661281..3661970 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BK055_RS18190 (BK055_18190) degS 3662047..3663210 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  BK055_RS18195 (BK055_18195) - 3663433..3664080 (+) 648 WP_063636496.1 YigZ family protein -
  BK055_RS18200 (BK055_18200) - 3664085..3665278 (+) 1194 WP_071182022.1 LCP family protein -
  BK055_RS18205 (BK055_18205) - 3665378..3666454 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=202841 BK055_RS18185 WP_003219701.1 3661281..3661970(-) (degU) [Bacillus velezensis strain 9912D]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=202841 BK055_RS18185 WP_003219701.1 3661281..3661970(-) (degU) [Bacillus velezensis strain 9912D]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment