Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BK055_RS13085 Genome accession   NZ_CP017775
Coordinates   2677521..2678288 (-) Length   255 a.a.
NCBI ID   WP_014470678.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2672521..2683288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS13065 (BK055_13065) - 2672723..2673535 (-) 813 WP_071181854.1 pyruvate, water dikinase regulatory protein -
  BK055_RS13070 (BK055_13070) ccpN 2673561..2674199 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  BK055_RS13075 (BK055_13075) glyS 2674300..2676339 (-) 2040 WP_071181855.1 glycine--tRNA ligase subunit beta -
  BK055_RS13080 (BK055_13080) glyQ 2676332..2677219 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  BK055_RS13085 (BK055_13085) recO 2677521..2678288 (-) 768 WP_014470678.1 DNA repair protein RecO Machinery gene
  BK055_RS13090 (BK055_13090) - 2678325..2678468 (-) 144 WP_007408286.1 YqzL family protein -
  BK055_RS13095 (BK055_13095) era 2678623..2679528 (-) 906 WP_014470680.1 GTPase Era -
  BK055_RS13100 (BK055_13100) - 2679509..2679919 (-) 411 WP_017418172.1 cytidine deaminase -
  BK055_RS13105 (BK055_13105) - 2680043..2680417 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  BK055_RS13110 (BK055_13110) ybeY 2680398..2680871 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BK055_RS13115 (BK055_13115) - 2680872..2683004 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29300.98 Da        Isoelectric Point: 9.0137

>NTDB_id=202822 BK055_RS13085 WP_014470678.1 2677521..2678288(-) (recO) [Bacillus velezensis strain 9912D]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=202822 BK055_RS13085 WP_014470678.1 2677521..2678288(-) (recO) [Bacillus velezensis strain 9912D]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.196

100

0.902

Multiple sequence alignment