Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BKP58_RS18120 Genome accession   NZ_CP017763
Coordinates   3376925..3377569 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371925..3382569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS18095 (BKP58_18035) - 3372276..3372644 (-) 369 WP_014477834.1 hypothetical protein -
  BKP58_RS22780 - 3372758..3372883 (-) 126 WP_003228793.1 hypothetical protein -
  BKP58_RS18100 (BKP58_18040) degQ 3373105..3373245 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BKP58_RS18105 (BKP58_18045) - 3373430..3374293 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  BKP58_RS18110 (BKP58_18050) comX 3374295..3374516 (+) 222 WP_014480704.1 competence pheromone ComX -
  BKP58_RS18115 (BKP58_18055) comP 3374532..3376844 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  BKP58_RS18120 (BKP58_18060) comA 3376925..3377569 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BKP58_RS18125 (BKP58_18065) yuxO 3377588..3377968 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  BKP58_RS18130 (BKP58_18070) mnhG 3378007..3378381 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  BKP58_RS18135 (BKP58_18075) mrpF 3378365..3378649 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BKP58_RS18140 (BKP58_18080) mrpE 3378649..3379125 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BKP58_RS18145 (BKP58_18085) mrpD 3379131..3380612 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  BKP58_RS18150 (BKP58_18090) mrpC 3380605..3380946 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  BKP58_RS18155 (BKP58_18095) mrpB 3380946..3381377 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=202690 BKP58_RS18120 WP_003220716.1 3376925..3377569(+) (comA) [Bacillus subtilis strain 29R7-12]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=202690 BKP58_RS18120 WP_003220716.1 3376925..3377569(+) (comA) [Bacillus subtilis strain 29R7-12]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment