Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CHQ92_RS03135 Genome accession   NZ_CP022730
Coordinates   590386..590862 (+) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli strain SA186     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585386..595862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHQ92_RS03105 (CHQ92_03250) - 586277..587347 (+) 1071 WP_061157908.1 patatin-like phospholipase family protein -
  CHQ92_RS03110 (CHQ92_03255) - 587483..588160 (+) 678 WP_001362823.1 hypothetical protein -
  CHQ92_RS03115 (CHQ92_03260) - 588176..588586 (+) 411 WP_061157909.1 hypothetical protein -
  CHQ92_RS03125 (CHQ92_03270) - 588807..589628 (+) 822 WP_001234571.1 DUF932 domain-containing protein -
  CHQ92_RS03130 (CHQ92_03275) - 589891..590370 (+) 480 WP_061157910.1 antirestriction protein -
  CHQ92_RS03135 (CHQ92_03280) radC 590386..590862 (+) 477 WP_001186786.1 RadC family protein Machinery gene
  CHQ92_RS03140 (CHQ92_03285) yeeT 590925..591146 (+) 222 WP_061157911.1 DUF987 domain-containing protein -
  CHQ92_RS03145 (CHQ92_03290) cbeA 591220..591588 (+) 369 WP_001535568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CHQ92_RS03150 (CHQ92_03295) cbtA 591677..592051 (+) 375 WP_061157912.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CHQ92_RS03155 (CHQ92_03300) yeeW 592048..592242 (+) 195 WP_000988601.1 DUF5983 family protein -
  CHQ92_RS03160 - 592288..592368 (+) 81 Protein_603 hypothetical protein -
  CHQ92_RS28895 (CHQ92_03305) - 592657..592830 (-) 174 WP_032082634.1 transposase domain-containing protein -
  CHQ92_RS28900 (CHQ92_03310) - 592857..593039 (+) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  CHQ92_RS03175 (CHQ92_03315) tmaR 593140..593469 (-) 330 WP_000450409.1 DUF496 family protein -
  CHQ92_RS03180 (CHQ92_03320) yeeA 593641..594699 (-) 1059 WP_001200890.1 FUSC family protein -
  CHQ92_RS03185 (CHQ92_03325) sbmC 594897..595370 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=202689 CHQ92_RS03135 WP_001186786.1 590386..590862(+) (radC) [Escherichia coli strain SA186]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202689 CHQ92_RS03135 WP_001186786.1 590386..590862(+) (radC) [Escherichia coli strain SA186]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment