Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | BKP57_RS22805 | Genome accession | NZ_CP017762 |
| Coordinates | 1989809..1990114 (-) | Length | 101 a.a. |
| NCBI ID | WP_072741389.1 | Uniprot ID | - |
| Organism | Virgibacillus sp. 6R | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1984809..1995114
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKP57_RS08980 (BKP57_08805) | - | 1985877..1986371 (-) | 495 | WP_072741385.1 | hypothetical protein | - |
| BKP57_RS08985 (BKP57_08810) | - | 1986876..1987658 (+) | 783 | WP_156875305.1 | hypothetical protein | - |
| BKP57_RS08990 (BKP57_08815) | - | 1987956..1989107 (-) | 1152 | WP_072741387.1 | M56 family metallopeptidase | - |
| BKP57_RS08995 (BKP57_08820) | - | 1989116..1989490 (-) | 375 | WP_072741388.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| BKP57_RS22805 (BKP57_08825) | comFA | 1989809..1990114 (-) | 306 | WP_072741389.1 | DEAD/DEAH box helicase family protein | Machinery gene |
| BKP57_RS22040 | - | 1990627..1990782 (+) | 156 | Protein_1774 | IS5/IS1182 family transposase | - |
| BKP57_RS09010 (BKP57_08835) | - | 1991096..1992133 (-) | 1038 | WP_050350869.1 | nitronate monooxygenase | - |
| BKP57_RS09015 (BKP57_08840) | - | 1992547..1993824 (+) | 1278 | WP_072741390.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11293.14 Da Isoelectric Point: 5.6700
>NTDB_id=202636 BKP57_RS22805 WP_072741389.1 1989809..1990114(-) (comFA) [Virgibacillus sp. 6R]
MAVCGSGKTEMLFSGIEEALRQGMRICIATPRIDVVRELLPRIQQAFSAVAIQALYGDSGEKQGTSQIMIASTHQLLRFE
HAFDVVVIDEIDAFPYYKMLR
MAVCGSGKTEMLFSGIEEALRQGMRICIATPRIDVVRELLPRIQQAFSAVAIQALYGDSGEKQGTSQIMIASTHQLLRFE
HAFDVVVIDEIDAFPYYKMLR
Nucleotide
Download Length: 306 bp
>NTDB_id=202636 BKP57_RS22805 WP_072741389.1 1989809..1990114(-) (comFA) [Virgibacillus sp. 6R]
TTGGCTGTTTGTGGATCTGGAAAAACAGAGATGCTATTTTCTGGAATCGAAGAAGCATTGCGACAAGGAATGCGAATTTG
TATAGCTACGCCAAGAATAGACGTGGTAAGGGAATTATTACCCCGAATACAACAGGCTTTTTCAGCAGTAGCCATTCAGG
CATTGTATGGGGATAGCGGTGAAAAGCAAGGTACTTCGCAAATCATGATCGCATCAACTCATCAGCTATTACGGTTTGAA
CACGCGTTTGATGTCGTCGTCATTGATGAAATAGACGCTTTCCCTTATTACAAGATGCTTCGTTAG
TTGGCTGTTTGTGGATCTGGAAAAACAGAGATGCTATTTTCTGGAATCGAAGAAGCATTGCGACAAGGAATGCGAATTTG
TATAGCTACGCCAAGAATAGACGTGGTAAGGGAATTATTACCCCGAATACAACAGGCTTTTTCAGCAGTAGCCATTCAGG
CATTGTATGGGGATAGCGGTGAAAAGCAAGGTACTTCGCAAATCATGATCGCATCAACTCATCAGCTATTACGGTTTGAA
CACGCGTTTGATGTCGTCGTCATTGATGAAATAGACGCTTTCCCTTATTACAAGATGCTTCGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
64.211 |
94.059 |
0.604 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
52.632 |
94.059 |
0.495 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
47.368 |
94.059 |
0.446 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
47.368 |
94.059 |
0.446 |
| comFA/cflA | Streptococcus pneumoniae D39 |
47.368 |
94.059 |
0.446 |
| comFA/cflA | Streptococcus pneumoniae R6 |
47.368 |
94.059 |
0.446 |
| comFA/cflA | Streptococcus mitis SK321 |
46.316 |
94.059 |
0.436 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
46.316 |
94.059 |
0.436 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
45.263 |
94.059 |
0.426 |