Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BJN34_RS06225 Genome accession   NZ_CP017757
Coordinates   1346210..1348624 (+) Length   804 a.a.
NCBI ID   WP_078195829.1    Uniprot ID   A0A1U9UL46
Organism   Cupriavidus necator strain NH9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341210..1353624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJN34_RS06205 (BJN34_06180) - 1342024..1343133 (-) 1110 WP_078195825.1 hypothetical protein -
  BJN34_RS06210 (BJN34_06185) - 1343280..1344530 (+) 1251 WP_078195826.1 lipoprotein-releasing ABC transporter permease subunit -
  BJN34_RS06215 (BJN34_06190) lolD 1344523..1345263 (+) 741 WP_078195827.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BJN34_RS06220 (BJN34_06195) - 1345277..1346137 (+) 861 WP_078195828.1 TatD family hydrolase -
  BJN34_RS06225 (BJN34_06200) comA 1346210..1348624 (+) 2415 WP_078195829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BJN34_RS06230 (BJN34_06205) - 1348634..1349572 (-) 939 WP_078195830.1 SIS domain-containing protein -
  BJN34_RS37890 - 1349616..1349828 (-) 213 WP_123957873.1 hypothetical protein -
  BJN34_RS06235 (BJN34_06210) edd 1349827..1351722 (+) 1896 WP_078195831.1 phosphogluconate dehydratase -
  BJN34_RS06240 (BJN34_06215) - 1351873..1352379 (+) 507 WP_206363381.1 gluconokinase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 85078.38 Da        Isoelectric Point: 11.6454

>NTDB_id=202557 BJN34_RS06225 WP_078195829.1 1346210..1348624(+) (comA) [Cupriavidus necator strain NH9]
MRRFVVAFVAGCWTLQQQSTLPPQVGLHLGAVVLALIALGMALWGRRLHVVPHGLALAGLAFGAAFCWAAWRADLRMRDW
LPTTLEARDLDVRGVVSGLPADAAAGTRFAFTVEQGEAGQPLPRRVILNWRGAPPDLRPGQRLALTVRLRRPRGLANPFG
FDYAYWLLAQGYGATGYVRSAQGSPQDASGERLAWRIEARRAAVRDHLRAALPKDARFGAVLIALVIGDQRGIEADNWKL
FRRTGVSHLVAISGLHITMIAGMAGSLAGLLWRHSFGLGRWLRRPLPLWLPARQAALVVAVASALAYGLLAGMQIPALRT
VAMLCVAAVAVWGARAPPVSVVLAWAALVALLLDPWAVMLPGFWLSFGAVAVIFFAARPGRDAVVAGRWQRLRATLATGA
RTQWAVTIGLVPLTLLLFGQVSVVSPLANAVAIPVVSLLVTPLALLGAALPAMLAVPVLAVAHLAMVALAAVLEWLSVLP
WAMWEAASAGPLALGLAALGVGLLVAPVATARMRLRGGLLMLPMLLARGPPVAHGQFRAVMFDVGQGTAVLVRTRSHALL
YDAGPAYGSGSSAGAQVVLPWLRGEGIGRLDHLMVSHEDTDHAGGVADVEAAVAVVARSTGAPVGHALLGAQAGQWAPCA
AGQQWNWDGVRFTVLHPLAEDAQQSAVASNARSCVLRVDTAAHSLLLTGDIGMAQERALIDRLPAGALRADVLVVAHHGS
GTSSGAAWVEAVGPSAAVFQLGHANRYRHPGAEVWERYGRARALRYRTDETGAVTMTTAPSGYALSMFRHAQARYWRARP
PAPS

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=202557 BJN34_RS06225 WP_078195829.1 1346210..1348624(+) (comA) [Cupriavidus necator strain NH9]
GTGCGTCGGTTCGTGGTGGCATTCGTCGCGGGATGCTGGACGCTGCAGCAGCAGTCAACGCTGCCGCCGCAGGTTGGCCT
GCACCTGGGCGCTGTGGTGCTGGCGCTGATCGCGCTCGGCATGGCCTTGTGGGGCAGACGCCTGCATGTCGTGCCGCATG
GCCTGGCGCTTGCCGGGCTGGCATTCGGCGCCGCCTTCTGCTGGGCTGCCTGGCGGGCCGATCTGCGCATGCGCGACTGG
CTGCCAACGACGCTGGAGGCACGCGACCTTGACGTTCGTGGTGTGGTATCAGGGCTGCCGGCCGATGCTGCCGCCGGGAC
GCGTTTTGCCTTTACCGTGGAGCAGGGTGAAGCGGGCCAGCCTTTGCCTCGCCGCGTGATCCTCAACTGGCGTGGTGCGC
CGCCCGACCTGCGTCCCGGGCAGCGTCTCGCGCTGACCGTTCGCCTGCGGCGGCCGCGCGGGCTCGCCAATCCTTTCGGT
TTCGACTACGCCTACTGGCTGCTGGCGCAAGGCTATGGCGCCACCGGCTATGTGCGCAGCGCACAGGGTTCGCCGCAGGA
TGCGTCGGGGGAGCGGCTGGCGTGGCGTATCGAAGCCCGGCGCGCCGCCGTGCGCGATCACCTGCGCGCGGCGCTGCCGA
AGGATGCGCGCTTTGGCGCGGTGCTGATCGCGCTGGTGATTGGCGACCAGCGCGGCATCGAGGCGGACAACTGGAAGCTG
TTCCGGCGCACCGGCGTGAGCCATCTGGTCGCCATTTCCGGGCTGCATATCACCATGATCGCCGGCATGGCGGGGTCGCT
TGCCGGGCTGCTGTGGCGGCATTCGTTCGGGCTCGGCCGCTGGCTGCGCCGGCCCTTGCCGCTGTGGCTGCCGGCCCGGC
AGGCTGCGCTGGTGGTGGCGGTGGCCAGTGCACTGGCGTATGGCCTGCTGGCTGGCATGCAGATCCCGGCGCTGCGCACC
GTGGCCATGCTCTGCGTGGCGGCCGTTGCGGTGTGGGGTGCGCGCGCGCCGCCCGTCTCGGTGGTGCTGGCGTGGGCGGC
GCTGGTGGCATTGCTGCTGGATCCGTGGGCGGTGATGCTGCCTGGCTTCTGGCTGTCGTTCGGCGCGGTGGCGGTGATTT
TCTTCGCCGCCCGGCCGGGCCGGGATGCCGTGGTGGCGGGGCGTTGGCAACGCCTGCGCGCCACGCTCGCCACCGGGGCG
CGCACGCAGTGGGCCGTGACCATCGGGCTGGTGCCGCTGACGTTGCTGCTGTTCGGGCAGGTGTCGGTGGTGTCGCCGTT
GGCCAATGCGGTGGCGATTCCGGTGGTCAGCCTGCTGGTGACGCCGCTGGCGTTGCTCGGCGCGGCCTTGCCGGCGATGC
TTGCCGTGCCGGTACTGGCCGTGGCGCACCTGGCAATGGTGGCGCTGGCTGCCGTGCTGGAGTGGCTTTCCGTGCTGCCG
TGGGCGATGTGGGAGGCTGCCAGTGCGGGGCCGTTGGCGCTAGGGCTGGCTGCGCTCGGGGTCGGGCTGCTGGTCGCGCC
TGTCGCCACGGCACGCATGCGCCTGCGCGGCGGGCTGCTGATGCTGCCGATGCTGCTGGCGCGCGGGCCGCCGGTAGCGC
ATGGCCAGTTCCGCGCGGTGATGTTCGACGTGGGGCAGGGCACGGCGGTGCTGGTGCGCACGCGTTCGCATGCGTTGCTG
TATGACGCCGGGCCAGCCTATGGGTCGGGGTCCAGCGCCGGTGCGCAGGTGGTGTTGCCGTGGCTGCGTGGCGAGGGGAT
TGGCCGGCTCGACCACCTGATGGTCAGCCATGAAGATACCGACCATGCCGGCGGCGTGGCAGACGTCGAGGCGGCGGTGG
CCGTGGTGGCGCGCAGCACGGGTGCGCCGGTCGGTCACGCCCTGCTTGGGGCGCAGGCAGGCCAATGGGCGCCGTGCGCG
GCGGGGCAGCAATGGAATTGGGACGGCGTGCGCTTTACCGTGCTGCATCCGTTGGCCGAGGACGCGCAGCAGTCCGCCGT
GGCCAGCAATGCGCGCAGTTGCGTGCTGCGCGTGGACACGGCGGCGCACAGCCTGCTGCTGACCGGCGATATCGGCATGG
CGCAGGAGCGCGCGTTGATCGATCGGCTGCCGGCCGGGGCGCTGCGTGCCGACGTGCTGGTGGTGGCCCACCATGGCAGC
GGCACTTCGTCGGGCGCGGCCTGGGTGGAGGCGGTGGGTCCGTCGGCCGCGGTGTTCCAGCTGGGCCATGCCAACCGCTA
TCGGCATCCGGGTGCCGAGGTGTGGGAGCGCTACGGCCGCGCCCGCGCCTTGCGCTACCGGACCGATGAAACCGGCGCGG
TGACCATGACCACGGCGCCATCGGGGTACGCGCTGTCGATGTTCCGGCACGCGCAGGCGCGCTACTGGCGGGCGCGGCCG
CCGGCGCCGAGCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-181)

Competence protein (Competence)

(225-506)

Metallo-beta-lactamase superfamily (Lactamase_B)

(544-743)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9UL46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.299

100

0.49
  comA Pseudomonas stutzeri DSM 10701

40.159

94.154

0.378

Multiple sequence alignment