Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CHY23_RS04540 Genome accession   NZ_CP022715
Coordinates   897326..899407 (-) Length   693 a.a.
NCBI ID   WP_005599444.1    Uniprot ID   A0ABN5MNK1
Organism   Actinobacillus pleuropneumoniae strain KL 16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892326..904407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHY23_RS04525 (CHY23_00909) menB 894124..894981 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  CHY23_RS04530 (CHY23_00910) - 895116..896822 (-) 1707 WP_005599433.1 RelA/SpoT family protein -
  CHY23_RS04535 (CHY23_00911) rpoZ 896918..897199 (-) 282 WP_005599441.1 DNA-directed RNA polymerase subunit omega -
  CHY23_RS04540 (CHY23_00912) recG 897326..899407 (-) 2082 WP_005599444.1 ATP-dependent DNA helicase RecG Machinery gene
  CHY23_RS04545 (CHY23_00913) - 899531..899896 (-) 366 WP_005599445.1 type II toxin-antitoxin system VapC family toxin -
  CHY23_RS04550 (CHY23_00914) - 899959..900246 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  CHY23_RS04555 (CHY23_00915) proS 900452..902167 (+) 1716 WP_005599448.1 proline--tRNA ligase -
  CHY23_RS11485 (CHY23_00916) - 902233..902421 (-) 189 WP_005602684.1 hypothetical protein -
  CHY23_RS04565 (CHY23_00917) - 902424..903005 (-) 582 WP_005599450.1 sigma-70 family RNA polymerase sigma factor -
  CHY23_RS04570 (CHY23_00918) msrP 903094..904050 (+) 957 WP_005619040.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77145.08 Da        Isoelectric Point: 8.1638

>NTDB_id=202386 CHY23_RS04540 WP_005599444.1 897326..899407(-) (recG) [Actinobacillus pleuropneumoniae strain KL 16]
MSEQLLDGVPLTALSGVGAAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLTAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQ
NSLRKLTEQALALLDKIKVGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQVR
VGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAEALIRRWLGERTEYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=202386 CHY23_RS04540 WP_005599444.1 897326..899407(-) (recG) [Actinobacillus pleuropneumoniae strain KL 16]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCCGGGGTGGGTGCGGCGATTGCGGAAAAACTTAGCCG
AATCGGCATTAATAACGTACAAGATCTATTATTTCATTTGCCTTATCGCTATGAAGATCGCACCCGAATTACGCCGATTA
TCGATGTGCGTCCGGAAAGTTTTTCTACCATCGAAGGTATCGTGCAAGTTACCGAAGTACAATTCGGTCGCCGTCCGATT
TTATCCACCGTGCTTTCTGACGGCACCAGTAAAATTACGCTGAAATTCTTTAATTTTAATGCGGGGATGAAAAACAGCCT
GACTGCCGGCACACGTGTAAAAGCTTTTGGCGAAATCAAACGCGGACGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACGTTAACGCCGATTTACTCCACAACAGAAGGTTTAAAGCAA
AATTCGTTACGTAAGCTCACCGAGCAAGCATTAGCGTTATTAGATAAAATCAAAGTCGGTGAACTGTTGCCGGACGAATA
CAATCCGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTACACCGCCCGCCGCCGGATATTTCTGCCGAACAGTTGG
AAAAAGGTGAGCATCCGGCACAAAAACGGCTGATTTTTGAAGAATTACTGGCGCACAACTTAGCAATGCAGCAAGTACGA
GTCGGAGTCAATCAGCTTACTGCTACACCGCTATGTTATCAAACCGATCTCAAAAGTCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCCCAAAGCCGGGTGACAGCGGATATCGAGCAAGATTTAGCCAAATCCTCACCAATGATGCGATTAG
TACAAGGCGATGTCGGATCGGGCAAAACTTTAGTTGCTGCGCTTGCCGCCCTGCTTGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACCGAAATCCTTGCCGAGCAGCACGCCAATAACTTTGCAAACTGGCTACGCCCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTCAAAGGCAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACGCACGCCCTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
TGCTACGCCAATTCCTCGTACCTTAGCAATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGAACGCCGATTACTACCGTGGCGATTTCGGAAGACAGACGAGATGAAATTGTGCGTCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCACAAGCTGCGGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGCATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
AAATTATGGCGGAATTTAAAGCGGCGAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCAAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTCGGCAAAATCTCGAGTAAACGCTTACAAGTGTTAC
GTGACAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTAGAAATTCGCGGCACGGGTGAAATTCTCGGTACCAAACAA
ACCGGTATGGCGGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATTCCATTAGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCCGAAGCACTGATTCGCCGCTGGCTGGGCGAGCGTACCGAATACAGCAACGCCT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(292-407)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

38.996

97.691

0.381
  recG/mmsA Streptococcus pneumoniae R6

38.931

94.517

0.368
  recG/mmsA Streptococcus pneumoniae R36A

38.931

94.517

0.368