Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SPG_1901 Genome accession   CP001015
Coordinates   1812444..1813454 (-) Length   336 a.a.
NCBI ID   ACF54874.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807444..1818454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1896 - 1807509..1808723 (-) 1215 ACF54779.1 aminotransferase -
  SPG_1897 - 1808879..1809172 (-) 294 ACF55672.1 conserved hypothetical protein -
  SPG_1898 - 1809335..1809787 (+) 453 ACF55483.1 conserved hypothetical protein -
  SPG_1899 - 1809822..1811210 (-) 1389 ACF56639.1 conserved hypothetical protein -
  SPG_1900 - 1811276..1812238 (+) 963 ACF56423.1 L-Asparaginase, putative -
  SPG_1901 ccpA 1812444..1813454 (-) 1011 ACF54874.1 Catabolite control protein CcpA, RegM Regulator
  SPG_1902 - 1813879..1814478 (-) 600 ACF56283.1 response regulator TCS11 -
  SPG_1903 - 1814480..1815577 (-) 1098 ACF56856.1 histidine kinase TCS11 -
  SPG_1904 - 1815577..1816314 (-) 738 ACF55047.1 conserved hypothetical protein -
  SPG_1905 - 1816316..1817200 (-) 885 ACF55681.1 ABC transporter, ATP-binding protein -
  SPG_1906 - 1817187..1817381 (-) 195 ACF55438.1 conserved hypothetical protein -
  SPG_1907 - 1817378..1817584 (-) 207 ACF55401.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37042.99 Da        Isoelectric Point: 5.3212

>NTDB_id=20228 SPG_1901 ACF54874.1 1812444..1813454(-) (ccpA) [Streptococcus pneumoniae G54]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=20228 SPG_1901 ACF54874.1 1812444..1813454(-) (ccpA) [Streptococcus pneumoniae G54]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGCTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACNGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994
  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568

Multiple sequence alignment