Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSU05_2182 Genome accession   CP000407
Coordinates   2082417..2083511 (+) Length   364 a.a.
NCBI ID   ABP91148.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077417..2088511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2177 - 2077935..2078474 (-) 540 ABP91143.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSU05_2178 - 2078484..2079341 (-) 858 ABP91144.1 Uncharacterized protein conserved in bacteria -
  SSU05_2179 - 2079493..2080707 (-) 1215 ABP91145.1 Predicted Zn-dependent peptidase -
  SSU05_2180 - 2080704..2081957 (-) 1254 ABP91146.1 Predicted Zn-dependent peptidase -
  SSU05_2181 - 2082031..2082414 (+) 384 ABP91147.1 Uncharacterized conserved protein -
  SSU05_2182 recF 2082417..2083511 (+) 1095 ABP91148.1 Recombinational DNA repair ATPase (RecF pathway) Machinery gene
  SSU05_2183 - 2083783..2085264 (-) 1482 ABP91149.1 inosine-5'-monophosphate dehydrogenase -
  SSU05_2184 - 2085496..2086587 (-) 1092 ABP91150.1 tryptophanyl-tRNA synthetase -
  SSU05_2185 - 2086703..2086879 (+) 177 ABP91151.1 hypothetical protein -
  SSU05_2186 - 2086876..2087757 (+) 882 ABP91152.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=20217 SSU05_2182 ABP91148.1 2082417..2083511(+) (recF) [Streptococcus suis 05ZYH33]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=20217 SSU05_2182 ABP91148.1 2082417..2083511(+) (recF) [Streptococcus suis 05ZYH33]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment