Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   SSU05_2124 Genome accession   CP000407
Coordinates   2030061..2030441 (-) Length   126 a.a.
NCBI ID   ABP91090.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025061..2035441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2119 - 2025258..2025608 (+) 351 ABP91085.1 hypothetical protein -
  SSU05_2120 - 2025757..2026548 (+) 792 ABP91086.1 Transposase and inactivated derivative -
  SSU05_2121 - 2026885..2027325 (-) 441 ABP91087.1 putative membrane protein -
  SSU05_2122 - 2027322..2027765 (-) 444 ABP91088.1 Response regulator of the LytR/AlgR family -
  SSU05_2123 hexA 2027897..2030077 (-) 2181 ABP91089.1 Mismatch repair ATPase (MutS family) Machinery gene
  SSU05_2124 hexA 2030061..2030441 (-) 381 ABP91090.1 Mismatch repair ATPase (MutS family) Machinery gene
  SSU05_2125 - 2030453..2030896 (-) 444 ABP91091.1 Arginine repressor -
  SSU05_2126 - 2031000..2032688 (+) 1689 ABP91092.1 Arginyl-tRNA synthetase -
  SSU05_2127 - 2032820..2033782 (+) 963 ABP91093.1 Surface antigen -
  SSU05_2128 - 2033834..2033956 (-) 123 ABP91094.1 Permease of the major facilitator superfamily -
  SSU05_2129 - 2033934..2034386 (-) 453 ABP91095.1 Permease of the major facilitator superfamily -
  SSU05_2130 - 2034465..2034647 (+) 183 ABP91096.1 hypothetical protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14088.87 Da        Isoelectric Point: 4.8380

>NTDB_id=20215 SSU05_2124 ABP91090.1 2030061..2030441(-) (hexA) [Streptococcus suis 05ZYH33]
MMATEKISPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTL
VELGHKVAIAEQMEDPKQAVGRGQAGSSAGHYSWYGNRLVQNGSRQ

Nucleotide


Download         Length: 381 bp        

>NTDB_id=20215 SSU05_2124 ABP91090.1 2030061..2030441(-) (hexA) [Streptococcus suis 05ZYH33]
ATGATGGCAACAGAAAAAATTTCTCCGGGAATGCAGCAGTATCTGGATATAAAAGCACAGTATCCAGATGCTTTTTTGCT
TTTCCGTATGGGAGACTTTTATGAATTATTTTATGAAGATGCGGTAGAAGCGGCACAGATTTTGGAATTGTCCTTGACCA
GTCGGAATAAGAATGCGGAAAATCCGATTCCCATGGCGGGGGTACCGTATCACGCGGCACAACAGTATATCGACACACTT
GTTGAATTGGGGCACAAGGTCGCAATTGCCGAGCAGATGGAAGATCCTAAGCAGGCAGTCGGGCGTGGTCAAGCGGGAAG
TAGTGCAGGTCATTACTCCTGGTACGGTAACAGACTCGTCCAAAATGGGAGCAGACAGTAA

Domains

Predicted by InterProScan.

MutS domain I (MutS_I)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

88

79.365

0.698
  mutS Pseudomonas stutzeri strain ATCC 17587

50

74.603

0.373

Multiple sequence alignment