Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   SSU05_2123 Genome accession   CP000407
Coordinates   2027897..2030077 (-) Length   726 a.a.
NCBI ID   ABP91089.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022897..2035077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2119 - 2025258..2025608 (+) 351 ABP91085.1 hypothetical protein -
  SSU05_2120 - 2025757..2026548 (+) 792 ABP91086.1 Transposase and inactivated derivative -
  SSU05_2121 - 2026885..2027325 (-) 441 ABP91087.1 putative membrane protein -
  SSU05_2122 - 2027322..2027765 (-) 444 ABP91088.1 Response regulator of the LytR/AlgR family -
  SSU05_2123 hexA 2027897..2030077 (-) 2181 ABP91089.1 Mismatch repair ATPase (MutS family) Machinery gene
  SSU05_2124 hexA 2030061..2030441 (-) 381 ABP91090.1 Mismatch repair ATPase (MutS family) Machinery gene
  SSU05_2125 - 2030453..2030896 (-) 444 ABP91091.1 Arginine repressor -
  SSU05_2126 - 2031000..2032688 (+) 1689 ABP91092.1 Arginyl-tRNA synthetase -
  SSU05_2127 - 2032820..2033782 (+) 963 ABP91093.1 Surface antigen -
  SSU05_2128 - 2033834..2033956 (-) 123 ABP91094.1 Permease of the major facilitator superfamily -
  SSU05_2129 - 2033934..2034386 (-) 453 ABP91095.1 Permease of the major facilitator superfamily -
  SSU05_2130 - 2034465..2034647 (+) 183 ABP91096.1 hypothetical protein -

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 81771.32 Da        Isoelectric Point: 4.9265

>NTDB_id=20214 SSU05_2123 ABP91089.1 2027897..2030077(-) (hexA) [Streptococcus suis 05ZYH33]
MGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTSLCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDE
VTEDVQLIDNSLTDLEKAAAGKLLSYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLD
ETKTAMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYDIERLASRVSFGKTMPKDLLQLSQTLG
NIPAIKNILQQINEPALGNLVAGLDPIPELHALISSAIDPEAQGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAK
EREASGINNLKIDYNKKDGYYFHVTNSNLGNVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFMRIRQ
EVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELTIDRGRHAVVEKVMGKQTYIPNSIHLNTDTHMQLI
TGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILF
DELGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYG
IHVAKIAGMPEELLQRADRILQTLENQAPTAPTHPAPSVVEEPSGQLDLFADTPSHPVLDELEKLDIYNMTPMEVMMAVA
ELKKKI

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=20214 SSU05_2123 ABP91089.1 2027897..2030077(-) (hexA) [Streptococcus suis 05ZYH33]
ATGGGAGCAGACAGTAACTATTTGGTTGCGATTGACCGTCAGGGAGTACAGTTCGCGCTTTCTTATATGGATGTGTCAAC
AGGTCAGTTTTTTGTGACTAGTTTGGATGATTTTACTAGTCTTTGCGGTGAGATCCGCAATTTACGGGCACGTGAATTGG
TCATCGGCTATGCTTTATCTGAGGAAGAAGAGCAGGTCTTTTCGAACCAGATGAACCTCCTGCTCTCTTTTGAGGATGAG
GTGACGGAAGATGTCCAGCTGATTGACAACTCCTTGACAGACTTGGAAAAGGCTGCGGCAGGTAAACTCCTCAGCTACCT
ACATCGGACTCAGATGCGAGATCTGAGCCACTTGCAAAAGGTGGTCCACTATGAAATCAAGGACTATCTGCAAATGGACT
ATGCAACCAAGTCCAGTCTGGACCTGCTTGAAAACGGTCGGACAGGCAAGAAGCATGGTAGTTTGTACTGGTTGCTAGAC
GAAACTAAGACAGCCATGGGTATGCGACTATTGCGGACATGGATTGATCGTCCCTTGATTGATCTTAAGCGGATTGAGAA
TCGTCAGGCTGTCGTTCAGGTTTTTCTGGATTACTTCTTTGAACGGAGTGACTTGGTCGAGGCTTTAAAAGGTGTCTATG
ACATCGAACGTTTGGCCAGCCGGGTGTCTTTTGGAAAAACCATGCCCAAGGATCTCTTGCAGCTCTCCCAGACTTTGGGA
AATATCCCAGCAATCAAGAATATCTTGCAACAAATCAATGAGCCTGCTCTAGGCAATTTGGTGGCTGGATTGGACCCAAT
CCCAGAACTGCACGCTCTCATCAGCTCTGCTATTGACCCAGAAGCCCAAGGGACCATCACAGATGGAAACATCATCCGTA
CAGGCTTTGACGAAACGCTGGATCAGTATCGTCTAGTCATGCGTGAGGGAGCGGGTTGGATTGCGGAGATTGAGGCCAAG
GAGCGTGAAGCATCTGGTATCAATAATCTTAAGATTGATTACAATAAAAAAGACGGTTACTATTTCCATGTTACCAATTC
CAATCTGGGCAATGTGCCGGACCATTTTTTCCGTAAGGCGACCTTGAAAAACTCGGAGCGCTATGGAACGGAAGAGTTGG
CTAAGATTGAAGGGCAGATGTTGGAGGCGCGTGATAAGTCTGCTAATTTGGAGTACGAGATTTTCATGCGGATTCGCCAA
GAGGTTGAGAAGTATATAGGTCGCTTGCAGAAGCTGGCTCGGACCATTGCAACCATCGATGTTTTGCAGGCCTTTGCAGT
TGTGGCGGAGCAGCAACATTTGGTTTGTCCACGCTTTACAGATCAAAGAGAACTGACCATTGACCGTGGTCGTCATGCGG
TGGTGGAGAAGGTCATGGGCAAGCAGACCTACATTCCCAACTCTATTCACTTGAATACCGATACACATATGCAACTGATT
ACTGGTCCAAACATGAGTGGTAAGTCTACCTATATGCGACAGTTGGCGGTTATCGTCATCATGGCGCAGATGGGTTCCTA
TGTGCCTGCGGATCAGGCTGAATTACCGATTTTCGATGCTATTTTCACCCGAATTGGGGCGGCAGACGACTTGGTTAGTG
GTCAATCGACCTTCATGGTCGAAATGATGGAGGCCAATAAGGCGGTCCGTCTGGCGACAGATCGGTCGCTCATCCTCTTT
GATGAGTTGGGACGGGGAACGGCCACCTATGACGGTATGGCCCTGGCCCAGTCTATCATCGAGTACATCCATGACAAGAT
TGGTGCCAAGACTCTCTTTGCCACCCACTACCATGAGTTGACAGACCTTAGCCAGACCTTGGAACACTTAGAGAATGTCC
ATGTATCGACCTTGGAGAAGGACGGCCAAGTCACCTTCCTCCACAAGATTGCCCAAGGTCCAGCTGACAAGTCCTACGGG
ATTCATGTGGCTAAGATTGCGGGAATGCCAGAGGAACTATTGCAGCGGGCAGATCGGATTTTGCAGACGCTTGAAAACCA
AGCCCCTACTGCACCAACTCACCCAGCTCCGTCAGTAGTGGAAGAACCGTCAGGTCAACTTGATCTCTTCGCAGACACGC
CTTCTCACCCAGTACTTGATGAACTGGAAAAACTAGACATCTACAATATGACCCCTATGGAAGTCATGATGGCGGTGGCG
GAGTTGAAGAAAAAAATATAA

Domains

Predicted by InterProScan.

MutS domain III (MutS_III)

(136-426)

MutS domain V (MutS_V)

(479-665)

MutS family domain IV (MutS_IV)

(295-385)

MutS domain II (MutS_II)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

71.547

99.725

0.713
  mutS Pseudomonas stutzeri strain ATCC 17587

36.043

100

0.366

Multiple sequence alignment