Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LA20531_RS06050 | Genome accession | NZ_CP017706 |
| Coordinates | 1158719..1159240 (-) | Length | 173 a.a. |
| NCBI ID | WP_013436847.1 | Uniprot ID | A0A7X7H2X7 |
| Organism | Lactobacillus amylovorus DSM 20531 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1153719..1164240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA20531_RS06030 (LA20531_05870) | dnaB | 1154370..1155764 (-) | 1395 | WP_056940281.1 | replicative DNA helicase | - |
| LA20531_RS06035 (LA20531_05875) | rplI | 1155794..1156249 (-) | 456 | WP_056940282.1 | 50S ribosomal protein L9 | - |
| LA20531_RS06040 (LA20531_05880) | - | 1156264..1158285 (-) | 2022 | WP_056940283.1 | DHH family phosphoesterase | - |
| LA20531_RS06045 (LA20531_05885) | rpsR | 1158454..1158690 (-) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| LA20531_RS06050 (LA20531_05890) | ssb | 1158719..1159240 (-) | 522 | WP_013436847.1 | single-stranded DNA-binding protein | Machinery gene |
| LA20531_RS06055 (LA20531_05895) | rpsF | 1159286..1159582 (-) | 297 | WP_005723612.1 | 30S ribosomal protein S6 | - |
| LA20531_RS06060 (LA20531_05900) | gyrA | 1159801..1162266 (-) | 2466 | WP_056940284.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18945.47 Da Isoelectric Point: 4.7317
>NTDB_id=202121 LA20531_RS06050 WP_013436847.1 1158719..1159240(-) (ssb) [Lactobacillus amylovorus DSM 20531]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKSAENFCNFTSKGSLVGVDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNNGNNSTPSTNNFQNNGGSQNNNPQNNNNQNNAQDPFAGS
GDTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKSAENFCNFTSKGSLVGVDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNNGNNSTPSTNNFQNNGGSQNNNPQNNNNQNNAQDPFAGS
GDTIDISDDDLPF
Nucleotide
Download Length: 522 bp
>NTDB_id=202121 LA20531_RS06050 WP_013436847.1 1158719..1159240(-) (ssb) [Lactobacillus amylovorus DSM 20531]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGCGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAAGGTGAGAGAGGCGCAGACTTCATTAGCTGTGTAATCT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCTAAAGGTTCATTAGTTGGTGTAGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGACGGGCAAAGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCGCATTACTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAATGGAAATAATAGTACACCAAGTACTAACAATTTCC
AAAATAATGGCGGATCACAAAACAATAATCCACAGAATAATAACAATCAAAATAATGCACAAGATCCATTCGCTGGATCA
GGTGATACGATTGATATTTCTGATGATGATCTTCCATTCTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGCGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAAGGTGAGAGAGGCGCAGACTTCATTAGCTGTGTAATCT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCTAAAGGTTCATTAGTTGGTGTAGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGACGGGCAAAGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCGCATTACTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAATGGAAATAATAGTACACCAAGTACTAACAATTTCC
AAAATAATGGCGGATCACAAAACAATAATCCACAGAATAATAACAATCAAAATAATGCACAAGATCCATTCGCTGGATCA
GGTGATACGATTGATATTTCTGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.584 |
100 |
0.636 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.802 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
34.615 |
100 |
0.364 |