Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AP3564_RS18525 Genome accession   NZ_CP017703
Coordinates   3740646..3740957 (-) Length   103 a.a.
NCBI ID   WP_063388095.1    Uniprot ID   -
Organism   Aeribacillus pallidus strain KCTC3564     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735646..3745957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS18490 (AP3564_18035) - 3736211..3737878 (+) 1668 WP_066247594.1 DEAD/DEAH box helicase -
  AP3564_RS18495 (AP3564_18040) - 3737930..3738727 (+) 798 WP_063388101.1 YqhG family protein -
  AP3564_RS18500 (AP3564_18045) - 3738818..3738997 (-) 180 WP_063388100.1 YqzE family protein -
  AP3564_RS18505 (AP3564_18050) comGG 3739117..3739488 (-) 372 WP_063388099.1 competence type IV pilus minor pilin ComGG -
  AP3564_RS18510 (AP3564_18055) comGF 3739485..3739916 (-) 432 WP_157728011.1 competence type IV pilus minor pilin ComGF -
  AP3564_RS18515 (AP3564_18060) - 3739906..3740232 (-) 327 WP_063388097.1 hypothetical protein -
  AP3564_RS18520 (AP3564_18065) comGD 3740216..3740677 (-) 462 WP_063388096.1 competence type IV pilus minor pilin ComGD -
  AP3564_RS18525 (AP3564_18070) comGC 3740646..3740957 (-) 312 WP_063388095.1 competence type IV pilus major pilin ComGC Machinery gene
  AP3564_RS18530 (AP3564_18075) comGB 3740962..3741993 (-) 1032 WP_063388094.1 competence type IV pilus assembly protein ComGB -
  AP3564_RS18535 (AP3564_18080) comGA 3741986..3743053 (-) 1068 WP_063388093.1 competence type IV pilus ATPase ComGA Machinery gene
  AP3564_RS18540 (AP3564_18085) - 3743509..3744738 (-) 1230 WP_027725928.1 IS110 family transposase -
  AP3564_RS18550 (AP3564_18095) - 3745172..3745417 (+) 246 WP_063388092.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11361.25 Da        Isoelectric Point: 5.0078

>NTDB_id=202015 AP3564_RS18525 WP_063388095.1 3740646..3740957(-) (comGC) [Aeribacillus pallidus strain KCTC3564]
MKIVKNEHGFTLVEMLVVLLVISILLIITIPNVMAHNKNIQNKGCEGLIDMVQGQVVAYEMEFHQTPTINDLITKGYLPN
NSGKCPNGDEIEIDANGNVIKSN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=202015 AP3564_RS18525 WP_063388095.1 3740646..3740957(-) (comGC) [Aeribacillus pallidus strain KCTC3564]
ATGAAAATAGTGAAAAATGAACATGGATTTACATTGGTGGAAATGCTGGTTGTACTGTTAGTGATCTCGATTTTGCTTAT
TATAACGATTCCGAATGTTATGGCTCATAATAAAAATATTCAAAATAAAGGGTGCGAAGGTTTAATTGATATGGTGCAGG
GGCAAGTCGTCGCATATGAAATGGAGTTTCATCAAACACCAACAATTAATGATTTAATCACTAAAGGGTACTTGCCGAAT
AATTCTGGAAAATGTCCAAATGGTGATGAGATTGAAATTGATGCAAATGGAAACGTCATTAAGAGCAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.471

84.466

0.485
  comGC Staphylococcus aureus MW2

39.604

98.058

0.388
  comGC Staphylococcus aureus N315

39.604

98.058

0.388

Multiple sequence alignment