Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPG_1116 Genome accession   CP001015
Coordinates   1093550..1094359 (-) Length   269 a.a.
NCBI ID   ACF55780.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088550..1099359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1112 ldh 1090896..1091882 (+) 987 ACF56088.1 L-lactate dehydrogenase -
  SPG_1113 - 1092171..1092914 (-) 744 ACF56454.1 transporter, cation channel family -
  SPG_1114 - 1092961..1093215 (-) 255 ACF55143.1 hypothetical protein -
  SPG_1115 - 1093217..1093459 (-) 243 ACF55454.1 conserved hypothetical protein -
  SPG_1116 vicX 1093550..1094359 (-) 810 ACF55780.1 VicX protein Regulator
  SPG_1117 micB 1094361..1095710 (-) 1350 ACF56485.1 histidine kinase TCS02 Regulator
  SPG_1118 micA 1095703..1096407 (-) 705 ACF56101.1 response regulator TCS02 Regulator
  SPG_1119 mutY 1096463..1097638 (-) 1176 ACF55665.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=20196 SPG_1116 ACF55780.1 1093550..1094359(-) (vicX) [Streptococcus pneumoniae G54]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=20196 SPG_1116 ACF55780.1 1093550..1094359(-) (vicX) [Streptococcus pneumoniae G54]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment