Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LF20184_RS00330 Genome accession   NZ_CP017702
Coordinates   70593..71174 (+) Length   193 a.a.
NCBI ID   WP_010017917.1    Uniprot ID   -
Organism   Companilactobacillus farciminis KCTC 3681 = DSM 20184     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 65593..76174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF20184_RS00315 (LF20184_00320) gyrB 65599..67548 (+) 1950 WP_010017921.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LF20184_RS00320 (LF20184_00325) gyrA 67565..70057 (+) 2493 WP_010017919.1 DNA gyrase subunit A -
  LF20184_RS00325 (LF20184_00330) rpsF 70259..70555 (+) 297 WP_010017918.1 30S ribosomal protein S6 -
  LF20184_RS00330 (LF20184_00335) ssb 70593..71174 (+) 582 WP_010017917.1 single-stranded DNA-binding protein Machinery gene
  LF20184_RS00335 (LF20184_00340) rpsR 71196..71432 (+) 237 WP_010017915.1 30S ribosomal protein S18 -
  LF20184_RS00340 (LF20184_00345) - 71755..71955 (+) 201 WP_010017914.1 helix-turn-helix transcriptional regulator -
  LF20184_RS00345 (LF20184_00350) - 71986..72519 (+) 534 WP_010017913.1 hypothetical protein -
  LF20184_RS00350 (LF20184_00355) - 72676..74676 (+) 2001 WP_010017912.1 DHH family phosphoesterase -
  LF20184_RS00355 (LF20184_00360) rplI 74690..75145 (+) 456 WP_056945185.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21282.61 Da        Isoelectric Point: 4.7512

>NTDB_id=201955 LF20184_RS00330 WP_010017917.1 70593..71174(+) (ssb) [Companilactobacillus farciminis KCTC 3681 = DSM 20184]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNSGAGSNQAPSYNNNNNQSSQSPFGNNNNNNYGNNAGNGNFDNSNNNS
NNNNQSNNSNNNNGDPFANNSKPIDISDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=201955 LF20184_RS00330 WP_010017917.1 70593..71174(+) (ssb) [Companilactobacillus farciminis KCTC 3681 = DSM 20184]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCTAATGGAGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATCAATTGTGTCATTT
GGAGAAAAGCTGCCGAGAATTTTTCTAATTTCACTAACAAAGGTTCTCTTGTAGGTATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAACGAGTATATGTAACAGAAGTAGTTGTAGAAAACTTCTCCTTGTTAGAATCTCGTGC
CGAAAGTGAAAAGAGAAATTCCGGTGCTGGTTCCAATCAAGCACCTAGCTATAATAACAACAACAATCAATCAAGTCAGT
CTCCATTTGGAAATAATAATAACAACAATTATGGAAATAACGCTGGCAACGGCAATTTCGATAATAGTAACAACAATTCT
AATAACAATAATCAATCTAACAATTCTAACAATAATAATGGCGATCCTTTTGCTAACAACAGCAAGCCGATTGACATTTC
TGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.622

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.513

100

0.575

Multiple sequence alignment