Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BSG32_RS04885 Genome accession   NZ_CP022552
Coordinates   961213..961941 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 956213..966941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS04860 (BSG32_04870) trpR 956600..956911 (+) 312 WP_005497218.1 trp operon repressor -
  BSG32_RS04865 (BSG32_04875) yjjX 956960..957493 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  BSG32_RS04870 (BSG32_04880) pheA 957518..958696 (-) 1179 WP_005468591.1 prephenate dehydratase -
  BSG32_RS04875 (BSG32_04885) hpf 958940..959266 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BSG32_RS04880 (BSG32_04890) - 959597..961078 (-) 1482 WP_021450233.1 lytic transglycosylase F -
  BSG32_RS04885 (BSG32_04895) comL 961213..961941 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  BSG32_RS04890 (BSG32_04900) rluD 962078..963055 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BSG32_RS04895 (BSG32_04905) pgeF 963057..963785 (+) 729 WP_047732495.1 peptidoglycan editing factor PgeF -
  BSG32_RS04900 (BSG32_04910) clpC 963933..966506 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=201710 BSG32_RS04885 WP_005460312.1 961213..961941(-) (comL) [Vibrio parahaemolyticus strain MAVP-R]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=201710 BSG32_RS04885 WP_005460312.1 961213..961941(-) (comL) [Vibrio parahaemolyticus strain MAVP-R]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405