Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   CG712_RS05255 Genome accession   NZ_CP022547
Coordinates   1012172..1012432 (-) Length   86 a.a.
NCBI ID   WP_096811684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1007172..1017432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS05220 (CG712_05255) - 1007542..1007985 (-) 444 WP_002946118.1 hypothetical protein -
  CG712_RS10305 (CG712_05260) - 1008059..1008484 (-) 426 WP_096811681.1 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS05230 (CG712_05265) - 1008727..1008924 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  CG712_RS05235 (CG712_05270) - 1009173..1010366 (-) 1194 WP_096811682.1 acetate kinase -
  CG712_RS05240 (CG712_05275) comGH 1010422..1011378 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  CG712_RS05245 (CG712_05280) comGG 1011423..1011740 (-) 318 WP_096811683.1 competence type IV pilus minor pilin ComGG Machinery gene
  CG712_RS05250 (CG712_05285) comGF 1011718..1012155 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  CG712_RS05255 (CG712_05290) comGE 1012172..1012432 (-) 261 WP_096811684.1 competence type IV pilus minor pilin ComGE Machinery gene
  CG712_RS05260 (CG712_05295) comGD 1012404..1012832 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG712_RS05265 (CG712_05300) comGC 1012792..1013118 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CG712_RS05270 (CG712_05305) comGB 1013115..1014215 (-) 1101 WP_157769911.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG712_RS05275 (CG712_05310) comGA/cglA/cilD 1014097..1015038 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  CG712_RS05280 (CG712_05315) - 1015119..1015481 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9637.35 Da        Isoelectric Point: 10.3070

>NTDB_id=201632 CG712_RS05255 WP_096811684.1 1012172..1012432(-) (comGE) [Streptococcus thermophilus strain B59671]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYE

Nucleotide


Download         Length: 261 bp        

>NTDB_id=201632 CG712_RS05255 WP_096811684.1 1012172..1012432(-) (comGE) [Streptococcus thermophilus strain B59671]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

45.349

100

0.453
  comGE Streptococcus mutans UA159

45.349

100

0.453
  comGE/cglE Streptococcus pneumoniae Rx1

40.244

95.349

0.384
  comGE/cglE Streptococcus pneumoniae D39

40.244

95.349

0.384
  comGE/cglE Streptococcus pneumoniae R6

40.244

95.349

0.384
  comGE/cglE Streptococcus pneumoniae TIGR4

40.244

95.349

0.384
  comGE/cglE Streptococcus mitis SK321

39.024

95.349

0.372
  comGE/cglE Streptococcus mitis NCTC 12261

39.024

95.349

0.372

Multiple sequence alignment