Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   CG712_RS05245 Genome accession   NZ_CP022547
Coordinates   1011423..1011740 (-) Length   105 a.a.
NCBI ID   WP_096811683.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006423..1016740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS05215 (CG712_05250) - 1006777..1007439 (-) 663 WP_096811680.1 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS05220 (CG712_05255) - 1007542..1007985 (-) 444 WP_002946118.1 hypothetical protein -
  CG712_RS10305 (CG712_05260) - 1008059..1008484 (-) 426 WP_096811681.1 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS05230 (CG712_05265) - 1008727..1008924 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  CG712_RS05235 (CG712_05270) - 1009173..1010366 (-) 1194 WP_096811682.1 acetate kinase -
  CG712_RS05240 (CG712_05275) comGH 1010422..1011378 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  CG712_RS05245 (CG712_05280) comGG 1011423..1011740 (-) 318 WP_096811683.1 competence type IV pilus minor pilin ComGG Machinery gene
  CG712_RS05250 (CG712_05285) comGF 1011718..1012155 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  CG712_RS05255 (CG712_05290) comGE 1012172..1012432 (-) 261 WP_096811684.1 competence type IV pilus minor pilin ComGE Machinery gene
  CG712_RS05260 (CG712_05295) comGD 1012404..1012832 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG712_RS05265 (CG712_05300) comGC 1012792..1013118 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CG712_RS05270 (CG712_05305) comGB 1013115..1014215 (-) 1101 WP_157769911.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG712_RS05275 (CG712_05310) comGA/cglA/cilD 1014097..1015038 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  CG712_RS05280 (CG712_05315) - 1015119..1015481 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11865.94 Da        Isoelectric Point: 10.6876

>NTDB_id=201630 CG712_RS05245 WP_096811683.1 1011423..1011740(-) (comGG) [Streptococcus thermophilus strain B59671]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQRRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVASKGQIKTYRYVNKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=201630 CG712_RS05245 WP_096811683.1 1011423..1011740(-) (comGG) [Streptococcus thermophilus strain B59671]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGAGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGACGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAATAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371
  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362

Multiple sequence alignment