Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJP62_RS09040 Genome accession   NZ_CP017668
Coordinates   1910164..1911516 (-) Length   450 a.a.
NCBI ID   WP_083300807.1    Uniprot ID   -
Organism   Jeongeupia sp. USM3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905164..1916516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP62_RS09015 (BJP62_09015) argB 1905506..1906384 (+) 879 WP_070529136.1 acetylglutamate kinase -
  BJP62_RS09020 (BJP62_09020) - 1906494..1906925 (+) 432 WP_070529138.1 CBS domain-containing protein -
  BJP62_RS09025 (BJP62_09025) - 1906957..1907610 (+) 654 WP_070529141.1 pyrimidine 5'-nucleotidase -
  BJP62_RS09030 (BJP62_09030) - 1907659..1909554 (-) 1896 WP_070529143.1 potassium transporter Kup -
  BJP62_RS09035 (BJP62_09035) ampD 1909598..1910167 (-) 570 WP_070529146.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BJP62_RS09040 (BJP62_09040) pilR 1910164..1911516 (-) 1353 WP_083300807.1 sigma-54 dependent transcriptional regulator Regulator
  BJP62_RS09045 (BJP62_09045) - 1911497..1913116 (-) 1620 WP_083300808.1 PAS domain-containing sensor histidine kinase -
  BJP62_RS09050 (BJP62_09050) - 1913124..1913621 (-) 498 WP_070529149.1 RNA pyrophosphohydrolase -
  BJP62_RS09055 (BJP62_09055) - 1913760..1914548 (-) 789 WP_070529152.1 fused MFS/spermidine synthase -
  BJP62_RS09060 (BJP62_09060) ttcA 1914548..1915492 (-) 945 WP_070529155.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  BJP62_RS09065 (BJP62_09065) - 1915574..1916314 (-) 741 WP_070529158.1 pteridine reductase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49096.94 Da        Isoelectric Point: 5.0003

>NTDB_id=201392 BJP62_RS09040 WP_083300807.1 1910164..1911516(-) (pilR) [Jeongeupia sp. USM3]
MARKPRNQRRVLVVDDEVDLADLLELTLVKLGLDVDKANNVAEARALLDTRNYDLLLTDMRMPDGEGIELIRHVQSARLD
VPAAVITAYGSTDNAVAALKAGAFDYLAKPVSLEQLRTLVKSALQLDDEAAPVPAGESPLLGDSPAIRQVHELVAKLARS
QAPVYVTGESGSGKERAARLIHARSSRADKPFVAVNCGAIPENLVESEFFGYRKGAFTGADSDRDGFFQAASGGTLFLDE
VADLPLAMQVKLLRVIQERKVRKVGSTTEEPVDVRLISATHQNLADCVDAGRFRLDLYYRLNVIELKMPPLREMGDDIVL
LARHIVARLADCNGIDVPVFAPEALAALARYHFPGNVRELENMLERALALSDGETVTPCDLQLDREDLEPGHADGGGLQD
YLDRVEKQAILEAIDKTGGNRTQAAKTLGVTFRSLRYRMDRLGIAGRGDT

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=201392 BJP62_RS09040 WP_083300807.1 1910164..1911516(-) (pilR) [Jeongeupia sp. USM3]
ATGGCCAGGAAACCGCGTAACCAACGCAGGGTGCTCGTCGTCGACGACGAAGTCGACCTCGCCGACCTGCTCGAACTGAC
CCTCGTCAAGCTGGGGCTCGACGTCGACAAGGCCAACAACGTCGCCGAGGCGCGGGCGCTGCTCGACACGCGCAACTACG
ATCTGCTGCTGACCGACATGCGCATGCCCGACGGCGAAGGGATCGAGCTGATCCGCCACGTCCAGTCGGCACGGCTCGAC
GTGCCGGCGGCGGTGATCACCGCCTACGGCAGCACCGACAACGCCGTCGCCGCGCTCAAGGCCGGTGCGTTCGACTATCT
GGCCAAGCCGGTGTCGCTCGAGCAGCTGCGCACGCTGGTCAAGTCGGCGCTGCAGCTCGACGACGAGGCCGCACCGGTCC
CTGCCGGCGAATCGCCGCTGCTTGGCGACTCGCCGGCGATCCGCCAGGTCCACGAGCTCGTCGCCAAGCTCGCCAGAAGC
CAGGCGCCGGTCTACGTGACCGGCGAGTCGGGCAGCGGCAAGGAGCGCGCGGCGCGGCTGATCCATGCCCGCTCAAGCCG
CGCCGACAAGCCTTTCGTCGCGGTCAACTGCGGCGCGATTCCGGAAAACCTCGTCGAAAGCGAGTTCTTTGGCTACCGCA
AGGGCGCGTTCACCGGCGCCGACAGCGACCGCGACGGCTTCTTCCAGGCCGCCAGCGGCGGCACGCTGTTCCTCGACGAG
GTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGGGTGATCCAGGAGCGCAAGGTCCGCAAGGTCGGCAGCAC
GACCGAGGAGCCGGTCGACGTGCGGCTGATCTCGGCGACCCACCAGAATCTCGCCGATTGTGTCGATGCCGGCCGCTTCC
GGCTCGACCTGTATTACCGGCTCAACGTGATCGAGCTGAAGATGCCGCCGCTGCGCGAGATGGGCGACGACATCGTCCTG
CTGGCCCGGCACATCGTCGCCCGGCTTGCCGACTGCAACGGCATCGACGTGCCGGTGTTCGCGCCGGAGGCGCTGGCCGC
GCTGGCGCGCTACCATTTTCCGGGCAATGTGCGCGAGCTCGAGAACATGCTCGAGCGCGCGCTGGCGCTGTCCGACGGCG
AAACCGTAACGCCGTGCGACCTGCAGCTCGACCGCGAGGATCTCGAGCCCGGACATGCCGACGGCGGCGGCCTGCAGGAC
TACCTCGACCGGGTCGAGAAGCAGGCGATCCTCGAGGCGATCGACAAGACCGGCGGCAACCGGACCCAGGCCGCCAAGAC
GCTCGGCGTGACCTTCCGCAGCCTGCGCTACCGGATGGACCGGCTCGGCATTGCCGGCCGGGGCGACACATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-441)

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.457

99.778

0.553
  pilR Acinetobacter baumannii strain A118

45.259

100

0.467
  luxO Vibrio cholerae strain A1552

38.94

96.444

0.376

Multiple sequence alignment