Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CGU45_RS21310 Genome accession   NZ_CP022526
Coordinates   4445985..4446629 (-) Length   214 a.a.
NCBI ID   WP_021263052.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Ocean-1155     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4440985..4451629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGU45_RS21280 (CGU45_21280) - 4441844..4442473 (+) 630 WP_023100784.1 glycoside hydrolase family 19 protein -
  CGU45_RS21285 (CGU45_21285) - 4442470..4442832 (+) 363 WP_023100785.1 hypothetical protein -
  CGU45_RS21290 (CGU45_21290) - 4442829..4443086 (+) 258 WP_003118919.1 hypothetical protein -
  CGU45_RS21295 (CGU45_21295) - 4443434..4444039 (+) 606 WP_003117978.1 aminodeoxychorismate/anthranilate synthase component II -
  CGU45_RS21300 (CGU45_21300) trpD 4444041..4445090 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  CGU45_RS21305 (CGU45_21305) trpC 4445087..4445923 (+) 837 WP_021263053.1 indole-3-glycerol phosphate synthase TrpC -
  CGU45_RS21310 (CGU45_21310) crp 4445985..4446629 (-) 645 WP_021263052.1 cAMP-activated global transcriptional regulator CRP Regulator
  CGU45_RS21315 (CGU45_21315) - 4446902..4447324 (+) 423 WP_003085219.1 OsmC family protein -
  CGU45_RS21320 (CGU45_21320) speD 4447644..4448438 (+) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  CGU45_RS21325 (CGU45_21325) coq7 4448493..4449140 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CGU45_RS21330 (CGU45_21330) - 4449240..4449578 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  CGU45_RS21335 (CGU45_21335) - 4449657..4451138 (+) 1482 WP_004355118.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24252.04 Da        Isoelectric Point: 8.0525

>NTDB_id=201349 CGU45_RS21310 WP_021263052.1 4445985..4446629(-) (crp) [Pseudomonas aeruginosa strain Ocean-1155]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGNQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=201349 CGU45_RS21310 WP_021263052.1 4445985..4446629(-) (crp) [Pseudomonas aeruginosa strain Ocean-1155]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAACCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment