Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SSU05_1869 Genome accession   CP000407
Coordinates   1767291..1767827 (-) Length   178 a.a.
NCBI ID   ABP90835.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762291..1772827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1865 - 1762642..1763598 (-) 957 ABP90831.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component -
  SSU05_1866 - 1763600..1764541 (-) 942 ABP90832.1 ABC-type oligopeptide transport system, ATPase component -
  SSU05_1867 - 1764544..1765542 (-) 999 ABP90833.1 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component -
  SSU05_1868 oppA 1765919..1767229 (-) 1311 ABP90834.1 peptide ABC transporter, peptide-binding protein Regulator
  SSU05_1869 oppA 1767291..1767827 (-) 537 ABP90835.1 hypothetical protein Regulator
  SSU05_1870 - 1767920..1769167 (+) 1248 ABP90836.1 D-alanyl-D-alanine carboxypeptidase -
  SSU05_1871 - 1769420..1770904 (-) 1485 ABP90837.1 ABC-type transport system involved in Fe-S cluster assembly, permease component -
  SSU05_1872 - 1770913..1771032 (-) 120 ABP90838.1 hypothetical protein -
  SSU05_1873 - 1771185..1771625 (-) 441 ABP90839.1 NifU-like protein involved in Fe-S cluster formation -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19807.91 Da        Isoelectric Point: 9.5500

>NTDB_id=20109 SSU05_1869 ABP90835.1 1767291..1767827(-) (oppA) [Streptococcus suis 05ZYH33]
MFLQNFLTKRLYLRKIYDIMIFIRHSNKCQTKRKQRCFMKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEV
KQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDSTFGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGK
DYKCQMVSHPINEYIFTN

Nucleotide


Download         Length: 537 bp        

>NTDB_id=20109 SSU05_1869 ABP90835.1 1767291..1767827(-) (oppA) [Streptococcus suis 05ZYH33]
ATGTTTTTACAAAATTTTCTGACAAAAAGACTTTATTTAAGAAAAATTTATGATATAATGATTTTTATAAGACATAGTAA
TAAGTGTCAAACAAAAAGAAAACAGAGGTGTTTTATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCC
TTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAAACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTA
AAACAAGATGGAACAGCAGTCGCAGATGCTCAATTGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAAT
TGATGAGTTGACTGAGAATACTACTGATTCAACATTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAAC
GTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGAATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAG
GATTACAAGTGTCAGATGGTGAGTCATCCAATCAACGAGTACATCTTTACCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

94.286

78.652

0.742

Multiple sequence alignment