Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SSU05_1372 Genome accession   CP000407
Coordinates   1313918..1314763 (-) Length   281 a.a.
NCBI ID   ABP90338.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308918..1319763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1369 - 1309120..1310433 (-) 1314 ABP90335.1 Glycosyltransferase -
  SSU05_1370 - 1310434..1311432 (-) 999 ABP90336.1 Glycosyltransferase -
  SSU05_1371 - 1311679..1313484 (+) 1806 ABP90337.1 Ribonucleases G and E -
  SSU05_1372 ccpA 1313918..1314763 (-) 846 ABP90338.1 Transcriptional regulator Regulator
  SSU05_1373 - 1315133..1316218 (+) 1086 ABP90339.1 Xaa-Pro aminopeptidase -
  SSU05_1374 - 1316257..1317399 (-) 1143 ABP90340.1 Queuine/archaeosine tRNA-ribosyltransferase -
  SSU05_1375 - 1317719..1318561 (+) 843 ABP90341.1 Predicted integral membrane protein -
  SSU05_1376 - 1318857..1319294 (-) 438 ABP90342.1 Predicted CoA-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30991.39 Da        Isoelectric Point: 4.9374

>NTDB_id=20100 SSU05_1372 ABP90338.1 1313918..1314763(-) (ccpA) [Streptococcus suis 05ZYH33]
MLLHVDWPASKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLT
DKIRAEFSRSRTPIVLAGTVDLEHQLPSVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGI
EFNEGLVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSIN
QPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=20100 SSU05_1372 ABP90338.1 1313918..1314763(-) (ccpA) [Streptococcus suis 05ZYH33]
ATGCTGTTGCACGTGGATTGGCCAGCAAGCAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTT
TGCAACCTTGGCCAAAGGTATTGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATG
ATGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACA
GACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACC
TAGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTG
TATCAGGCCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATC
GAGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGC
CGGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAACGGTGTCAGTGATATGGGCATCAAGG
TTCCGGAAGATTTTGAAATCATCACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAAT
CAGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGA
GGTAGTTCTTAACCACGGAATCAAAGTACGTAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(123-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

75.458

97.153

0.733
  ccpA Streptococcus gordonii str. Challis substr. CH1

74.359

97.153

0.722
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

53.285

97.509

0.52

Multiple sequence alignment