Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BJD94_RS14325 Genome accession   NZ_CP017635
Coordinates   2839413..2840060 (-) Length   215 a.a.
NCBI ID   WP_017420064.1    Uniprot ID   A0A2S3SZL1
Organism   Vibrio vulnificus Env1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834413..2845060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS14315 (BJD94_13030) uvrA 2835390..2838212 (-) 2823 WP_038940902.1 excinuclease ABC subunit UvrA -
  BJD94_RS14320 (BJD94_13035) galU 2838355..2839227 (-) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BJD94_RS14325 (BJD94_13040) qstR 2839413..2840060 (-) 648 WP_017420064.1 response regulator transcription factor Regulator
  BJD94_RS14330 (BJD94_13045) ssb 2840360..2840899 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  BJD94_RS14335 (BJD94_13050) csrD 2841052..2843049 (+) 1998 WP_038964215.1 RNase E specificity factor CsrD -
  BJD94_RS14340 (BJD94_13055) - 2843062..2844522 (+) 1461 WP_038964214.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24730.69 Da        Isoelectric Point: 9.8565

>NTDB_id=200827 BJD94_RS14325 WP_017420064.1 2839413..2840060(-) (qstR) [Vibrio vulnificus Env1]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=200827 BJD94_RS14325 WP_017420064.1 2839413..2840060(-) (qstR) [Vibrio vulnificus Env1]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGTATT
AGCGAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGCTGAGAGAGATTAAAAACCTACCGCTAATATGGAAGGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACAACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAACTTTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

46.729

99.535

0.465

Multiple sequence alignment