Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BJD94_RS13780 Genome accession   NZ_CP017635
Coordinates   2727706..2728338 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2722706..2733338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS13765 (BJD94_12490) astA 2724097..2725116 (+) 1020 WP_038939565.1 arginine N-succinyltransferase -
  BJD94_RS13770 (BJD94_12495) astD 2725134..2726591 (+) 1458 WP_045627642.1 succinylglutamate-semialdehyde dehydrogenase -
  BJD94_RS13775 (BJD94_12500) - 2726803..2727594 (+) 792 WP_039450021.1 DUF1338 domain-containing protein -
  BJD94_RS13780 (BJD94_12505) crp 2727706..2728338 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  BJD94_RS13785 (BJD94_12510) - 2728581..2729450 (-) 870 WP_011079298.1 phosphoribulokinase -
  BJD94_RS13790 (BJD94_12515) - 2729579..2729791 (-) 213 WP_011079299.1 YheU family protein -
  BJD94_RS13795 (BJD94_12520) - 2729847..2730824 (-) 978 WP_038939569.1 hydrolase -
  BJD94_RS13800 (BJD94_12525) - 2730970..2731449 (-) 480 WP_038939571.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=200820 BJD94_RS13780 WP_011079297.1 2727706..2728338(-) (crp) [Vibrio vulnificus Env1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=200820 BJD94_RS13780 WP_011079297.1 2727706..2728338(-) (crp) [Vibrio vulnificus Env1]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCATGCGGGCGAAAAAGCAGAAACACTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGCGCAAAATCTCCTTGTGAAGTCGCGGAAATCTCATTCAAGAAATTCCGTCAGCTAAT
TCAGGTAAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTTGCGAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAAAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment