Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SDD27957_08535 Genome accession   CM001076
Coordinates   1633083..1633724 (-) Length   213 a.a.
NCBI ID   EFY03312.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628083..1638724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_08515 - 1629459..1630097 (+) 639 EFY03308.1 hypothetical protein -
  SDD27957_08520 - 1630201..1631136 (+) 936 EFY03309.1 Cysteine synthase -
  SDD27957_08525 - 1631287..1631646 (-) 360 EFY03310.1 hypothetical protein -
  SDD27957_08530 - 1631646..1633046 (-) 1401 EFY03311.1 peptidyl-prolyl cis-trans isomerase -
  SDD27957_08535 vraR 1633083..1633724 (-) 642 EFY03312.1 Two-component response regulator yvqC Regulator
  SDD27957_08540 - 1633717..1634721 (-) 1005 EFY03313.1 Putative two-component sensor histidine kinase -
  SDD27957_08545 - 1634718..1635410 (-) 693 EFY03314.1 hypothetical protein -
  SDD27957_08550 pknB 1635537..1637432 (-) 1896 EFY03315.1 serine/threonine-protein kinase Regulator
  SDD27957_08555 - 1637429..1638169 (-) 741 EFY03316.1 Putative phosphoprotein phosphatase (pppL protein) -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23872.53 Da        Isoelectric Point: 4.8864

>NTDB_id=20080 SDD27957_08535 EFY03312.1 1633083..1633724(-) (vraR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MNNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLKILDKWKDAKI
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=20080 SDD27957_08535 EFY03312.1 1633083..1633724(-) (vraR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAATAATATAAGAGTGATACTAGTGGATGATCACGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGACGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTGCTGG
TTATGGATTTGGTGATGCCAGAACTAGGTGGTGTTGAGGCGACTTTGAAAATCCTCGATAAGTGGAAAGATGCCAAAATA
TTGGTCTTGACCTCTTATTTAGATAATGAGAAAATTTACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTTTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAACTAACCGCGCGCGAGTATGATATTTTATATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.208

97.183

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.371

Multiple sequence alignment