Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   BJK08_RS13825 Genome accession   NZ_CP017602
Coordinates   3062150..3062809 (-) Length   219 a.a.
NCBI ID   WP_028378979.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5945     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057150..3067809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK08_RS13810 (BJK08_13560) - 3058297..3058956 (+) 660 WP_027229077.1 hypothetical protein -
  BJK08_RS13815 (BJK08_13565) lcl 3059003..3060259 (+) 1257 WP_060871594.1 collagen-like adhesin Lcl -
  BJK08_RS13820 (BJK08_13570) uvrC 3060282..3062138 (-) 1857 WP_027229076.1 excinuclease ABC subunit UvrC -
  BJK08_RS13825 (BJK08_13575) letA 3062150..3062809 (-) 660 WP_028378979.1 two-component system response regulator LetA Regulator
  BJK08_RS13830 (BJK08_13580) phhA 3062934..3063752 (-) 819 WP_027229074.1 phenylalanine 4-monooxygenase -
  BJK08_RS13835 (BJK08_13585) - 3064200..3065297 (+) 1098 WP_027229073.1 competence/damage-inducible protein A -
  BJK08_RS13840 (BJK08_13590) cgtA 3065256..3066281 (-) 1026 WP_027229072.1 Obg family GTPase CgtA -
  BJK08_RS13845 (BJK08_13595) rpmA 3066499..3066777 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  BJK08_RS13850 (BJK08_13600) rplU 3066790..3067101 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24529.47 Da        Isoelectric Point: 5.1572

>NTDB_id=200697 BJK08_RS13825 WP_028378979.1 3062150..3062809(-) (letA) [Legionella pneumophila strain D5945]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPSDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=200697 BJK08_RS13825 WP_028378979.1 3062150..3062809(-) (letA) [Legionella pneumophila strain D5945]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGCGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACCAACCCAAATATTAAAGTCATAGCC
GTTACAGCCATTTGTTCAGATCCTCTTCCCACTCGAGTATTGCAATTAGGTGCGATGGGATATCTTACTAAAGAATCAGG
GGCTGAGGAAATGGCCGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAGATGG
CAATTAATAGCCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACAAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATACAGGAT
GTTTGAAAAATTGGGAATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAGTG
ATTTATCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.087

100

0.991
  letA Legionella pneumophila strain ERS1305867

99.087

100

0.991

Multiple sequence alignment