Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SDD27957_09850 Genome accession   CM001076
Coordinates   1868658..1869149 (-) Length   163 a.a.
NCBI ID   EFY03565.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1863658..1874149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_09835 - 1866420..1867364 (+) 945 EFY03562.1 CorA-like Mg2+ transporter protein -
  SDD27957_09840 - 1867496..1868164 (+) 669 EFY03563.1 hypothetical protein -
  SDD27957_09845 rpsR 1868301..1868540 (-) 240 EFY03564.1 30S ribosomal protein S18 -
  SDD27957_09850 ssbA 1868658..1869149 (-) 492 EFY03565.1 single-stranded DNA-binding protein Machinery gene
  SDD27957_09855 rpsF 1869171..1869461 (-) 291 EFY03566.1 30S ribosomal protein S6 -
  SDD27957_09860 - 1870014..1870343 (-) 330 EFY03567.1 hypothetical protein -
  SDD27957_09865 - 1870992..1871285 (-) 294 EFY03568.1 hypothetical protein -
  SDD27957_09880 - 1872665..1873462 (-) 798 EFY03569.1 transposase IS861 orfB -
  SDD27957_09885 - 1873498..1874013 (-) 516 EFY03570.1 transposase IS861 orfA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17968.76 Da        Isoelectric Point: 4.8894

>NTDB_id=20055 SDD27957_09850 EFY03565.1 1868658..1869149(-) (ssbA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQSGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=20055 SDD27957_09850 EFY03565.1 1868658..1869149(-) (ssbA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAGTGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATTGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTTCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGATTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374

Multiple sequence alignment