Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   Locus_0 Genome accession   AJ132366
Coordinates   1..571 (+) Length   189 a.a.
NCBI ID   CAA10653.1    Uniprot ID   -
Organism   Helicobacter pylori P1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..5571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Locus_0 comB6 1..571 (+) 571 CAA10653.1 hypothetical protein Machinery gene
  Locus_1 comB7 587..700 (+) 114 CAA10654.1 hypothetical protein Machinery gene
  Locus_2 comB8 697..1440 (+) 744 CAA10655.1 ComB1 protein Machinery gene
  Locus_3 comB9 1440..2420 (+) 981 CAA10656.1 ComB2 protein Machinery gene
  Locus_4 comB10 2413..3543 (+) 1131 CAA10657.1 ComB3 protein Machinery gene
  Locus_5 algA 3613..3962 (+) 350 CAA10658.1 mannose 6 phosphate isomerase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21099.97 Da        Isoelectric Point: 9.6697

>NTDB_id=20004 Locus_0 CAA10653.1 1..571(+) (comB6) [Helicobacter pylori P1]
IIILVYLEVHVWCSLGVLFLAFGFFKTWGSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLLVV
ALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSHAPSSVSPSTSGSVSKEKETHSPTFK
VETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 571 bp        

>NTDB_id=20004 Locus_0 CAA10653.1 1..571(+) (comB6) [Helicobacter pylori P1]
GATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTTTAAAA
CCTGGGGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGGTGGGG
TTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTAGTGGT
AGCGTTATTTTTGTGCTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAGCCTTA
AAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTCAATTCCTTACAATATATCACGACC
TCGCACGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACATTTAA
GGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATACAAAAA
ATGAAATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

95.767

100

0.958

Multiple sequence alignment