Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CFI09_RS01975 Genome accession   NZ_CP022279
Coordinates   407282..407914 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain STEC299     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 402282..412914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS01950 (CFI09_01955) yhfG 402414..402581 (+) 168 WP_000736858.1 YhfG family protein -
  CFI09_RS01955 (CFI09_01960) fic 402571..403173 (+) 603 WP_001280662.1 putative adenosine monophosphate-protein transferase Fic -
  CFI09_RS01960 (CFI09_01965) pabA 403205..403768 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  CFI09_RS01965 (CFI09_01970) argD 403854..405074 (+) 1221 WP_033553045.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CFI09_RS01970 (CFI09_01975) yhfK 405141..407231 (-) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  CFI09_RS01975 (CFI09_01980) crp 407282..407914 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CFI09_RS01985 (CFI09_01990) yhfA 408216..408620 (+) 405 WP_001148908.1 OsmC family protein -
  CFI09_RS01990 (CFI09_01995) prkB 408675..409544 (-) 870 WP_001274684.1 phosphoribulokinase -
  CFI09_RS01995 (CFI09_02000) yheU 409598..409816 (-) 219 WP_000907085.1 YheU family protein -
  CFI09_RS02000 (CFI09_02005) yheT 409810..410832 (-) 1023 WP_000057389.1 hydrolase -
  CFI09_RS02005 (CFI09_02010) yheS 410832..412745 (-) 1914 WP_101973428.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=199880 CFI09_RS01975 WP_000242755.1 407282..407914(-) (crp) [Escherichia coli strain STEC299]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=199880 CFI09_RS01975 WP_000242755.1 407282..407914(-) (crp) [Escherichia coli strain STEC299]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467