Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   CE141_RS00190 Genome accession   NZ_CP022164
Coordinates   36316..36906 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain M160133     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 31316..41906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE141_RS00175 (CE141_00175) ilvN 32600..32890 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  CE141_RS27975 - 33954..34436 (+) 483 WP_059337323.1 hypothetical protein -
  CE141_RS00185 (CE141_00185) - 34715..36154 (+) 1440 WP_001361939.1 hypothetical protein -
  CE141_RS00190 (CE141_00190) letA 36316..36906 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  CE141_RS00195 (CE141_00195) uhpB 36906..38408 (+) 1503 WP_022646294.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  CE141_RS00200 (CE141_00200) uhpC 38418..39737 (+) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  CE141_RS00205 (CE141_00205) uhpT 39875..41266 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=199608 CE141_RS00190 WP_000633668.1 36316..36906(+) (letA) [Escherichia coli strain M160133]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=199608 CE141_RS00190 WP_000633668.1 36316..36906(+) (letA) [Escherichia coli strain M160133]
ATGATCACCGTTGCACTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGTTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTGACCAAACGCGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCTAACCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment