Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BJJ97_RS21625 Genome accession   NZ_CP017481
Coordinates   4782493..4783566 (-) Length   357 a.a.
NCBI ID   WP_095700331.1    Uniprot ID   -
Organism   Pectobacterium polaris strain NIBIO1006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4777493..4788566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ97_RS21610 (BJJ97_21090) csrA 4778678..4778863 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  BJJ97_RS21615 (BJJ97_21095) alaS 4779188..4781815 (-) 2628 WP_095995271.1 alanine--tRNA ligase -
  BJJ97_RS21620 (BJJ97_21100) recX 4781953..4782447 (-) 495 WP_095995272.1 recombination regulator RecX -
  BJJ97_RS21625 (BJJ97_21105) recA 4782493..4783566 (-) 1074 WP_095700331.1 recombinase RecA Machinery gene
  BJJ97_RS21630 (BJJ97_21110) pncC 4783674..4784168 (-) 495 WP_095995273.1 nicotinamide-nucleotide amidase -
  BJJ97_RS21635 (BJJ97_21115) - 4784404..4784739 (-) 336 WP_095995274.1 hypothetical protein -
  BJJ97_RS21640 (BJJ97_21120) - 4785222..4785710 (+) 489 WP_039483902.1 SRPBCC family protein -
  BJJ97_RS21645 (BJJ97_21125) - 4785793..4786467 (+) 675 WP_039483901.1 MarC family NAAT transporter -
  BJJ97_RS21650 (BJJ97_21130) - 4786636..4788234 (+) 1599 WP_095995275.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38279.78 Da        Isoelectric Point: 5.0755

>NTDB_id=198680 BJJ97_RS21625 WP_095700331.1 4782493..4783566(-) (recA) [Pectobacterium polaris strain NIBIO1006]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELTPAAAGNSRDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=198680 BJJ97_RS21625 WP_095700331.1 4782493..4783566(-) (recA) [Pectobacterium polaris strain NIBIO1006]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAAGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTGGATATCGCGCTGGGTG
CTGGTGGCTTGCCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCTCAGCGTGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCACTGGACCCGATTTATGCGAAAAA
ACTTGGCGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAAGCGTTGGAGATCTGTGATGCACTCA
CGCGCTCTGGCGCTGTTGACGTTATCATCGTCGACTCCGTTGCGGCATTGACGCCGAAAGCCGAAATTGAAGGTGAAATC
GGCGACTCTCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACCACTGGTGGTA
ACGCACTGAAGTTTTACGCCTCCGTTCGTCTGGATATTCGTCGTACTGGCGCAATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGCGTGAAAGTCGTGAAGAATAAAGTGGCAGCGCCGTTCAAACAGGCTGAATTCCAAATCCTGTACGGTGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGCCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAACCCGACGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTACACAAAGGCAATGAACTGACGCCAGCCGCCGCTGGAAATAGCCGTGACGAAGA
TGAATTCGCTGGTGAAGGTAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.099

99.44

0.826
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.099

99.44

0.826
  recA Pseudomonas stutzeri DSM 10701

74.336

94.958

0.706
  recA Glaesserella parasuis strain SC1401

69.231

98.319

0.681
  recA Acinetobacter baylyi ADP1

71.726

94.118

0.675
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.385

91.597

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535

Multiple sequence alignment