Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJG89_RS08650 Genome accession   NZ_CP017466
Coordinates   1832498..1833370 (-) Length   290 a.a.
NCBI ID   WP_096810097.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain JS11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1827498..1838370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG89_RS08635 (BJG89_08505) xerC 1827762..1828652 (-) 891 WP_096810092.1 tyrosine recombinase XerC -
  BJG89_RS08640 (BJG89_08510) trmFO 1828772..1830079 (-) 1308 WP_096810094.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BJG89_RS08645 (BJG89_08515) topA 1830235..1832301 (-) 2067 WP_096810096.1 type I DNA topoisomerase -
  BJG89_RS08650 (BJG89_08520) dprA 1832498..1833370 (-) 873 WP_096810097.1 DNA-processing protein DprA Machinery gene
  BJG89_RS08655 (BJG89_08525) sucD 1833691..1834599 (-) 909 WP_096810099.1 succinate--CoA ligase subunit alpha -
  BJG89_RS08660 (BJG89_08530) sucC 1834621..1835787 (-) 1167 WP_096810101.1 ADP-forming succinate--CoA ligase subunit beta -
  BJG89_RS08665 (BJG89_08535) - 1835895..1836665 (-) 771 WP_096810103.1 ribonuclease HII -
  BJG89_RS08670 (BJG89_08540) ylqF 1836675..1837535 (-) 861 WP_096810105.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33183.40 Da        Isoelectric Point: 9.9980

>NTDB_id=198567 BJG89_RS08650 WP_096810097.1 1832498..1833370(-) (dprA) [Staphylococcus nepalensis strain JS11]
MDINHLYLKLRFAGMTTRQIHQLFNYECDFGSYNKREQQYKLKSYLTKIKSTKKMSIYDNFIKHDIESILLQLDRWKVKF
IGIKNTAYPNLLREIFEPPFILFYKGNLSLAQNEQSLAVVGSRQATSYTNEALRILFPSFKKRNLTIVSGLAEGADKLAH
QHALAHHMPAIAVLGFGHLNHYPKTTYVIRKQLEQKGLVVSEYLPYQKPLKHHFPERNRIISGLSKGVLITESTINSGTS
ITTNCALDQNREVYVLSGSIFNKMTMGNLISAQEGAKIVISAKDIIEDYH

Nucleotide


Download         Length: 873 bp        

>NTDB_id=198567 BJG89_RS08650 WP_096810097.1 1832498..1833370(-) (dprA) [Staphylococcus nepalensis strain JS11]
ATGGACATTAATCATCTATACTTAAAGTTACGCTTTGCAGGAATGACAACGAGACAAATACATCAATTATTTAATTATGA
ATGTGATTTTGGCTCTTATAATAAGAGAGAACAGCAGTATAAGTTGAAATCGTATTTAACTAAAATTAAATCAACGAAAA
AAATGAGTATATATGATAATTTTATTAAGCATGATATCGAATCTATTTTATTACAATTAGATAGGTGGAAAGTAAAATTC
ATCGGGATCAAAAACACTGCGTATCCAAATTTACTCCGTGAAATATTTGAGCCTCCCTTTATACTTTTTTATAAAGGAAA
CCTATCATTGGCACAAAATGAACAAAGTCTTGCGGTTGTTGGTTCTAGGCAAGCTACAAGTTATACAAACGAGGCCTTAA
GGATTCTTTTTCCTTCATTTAAAAAGAGAAATTTAACAATTGTTTCTGGCTTGGCAGAAGGCGCAGATAAATTAGCACAT
CAACACGCTTTAGCGCACCATATGCCTGCAATAGCAGTTTTAGGATTTGGACACTTAAACCATTATCCTAAGACAACATA
CGTTATCAGAAAGCAACTGGAGCAAAAAGGATTAGTCGTTAGCGAATACTTACCATATCAAAAACCACTCAAACATCACT
TTCCAGAAAGAAATAGAATTATTAGTGGTCTATCAAAAGGTGTTTTAATTACAGAATCGACAATCAATAGTGGAACATCT
ATAACAACAAATTGTGCGTTAGATCAAAATAGAGAAGTGTATGTTTTATCAGGTTCAATATTTAATAAAATGACAATGGG
TAATTTAATTAGTGCGCAAGAAGGCGCCAAAATCGTAATATCTGCAAAAGATATCATAGAAGATTATCATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.177

97.586

0.49
  dprA Staphylococcus aureus N315

50.177

97.586

0.49
  dprA Lactococcus lactis subsp. cremoris KW2

35.836

100

0.362

Multiple sequence alignment