Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM434_RS04680 Genome accession   NZ_CP021935
Coordinates   930609..931346 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR_0055     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925609..936346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM434_RS04665 (AM434_04680) clpC 926063..928636 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AM434_RS04670 (AM434_04685) yfiH 928766..929497 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  AM434_RS04675 (AM434_04690) rluD 929494..930474 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM434_RS04680 (AM434_04695) comL 930609..931346 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AM434_RS04690 (AM434_04705) raiA 931616..931957 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM434_RS29335 pheL 932061..932108 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AM434_RS04695 (AM434_04710) pheA 932207..933367 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM434_RS04700 (AM434_04715) tyrA 933410..934531 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AM434_RS04705 (AM434_04720) aroF 934542..935612 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AM434_RS04710 (AM434_04725) yfiL 935822..936187 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=198552 AM434_RS04680 WP_000197686.1 930609..931346(+) (comL) [Escherichia coli strain AR_0055]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=198552 AM434_RS04680 WP_000197686.1 930609..931346(+) (comL) [Escherichia coli strain AR_0055]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment