Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJD96_RS08530 Genome accession   NZ_CP017460
Coordinates   1788671..1789543 (-) Length   290 a.a.
NCBI ID   WP_096810097.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain JS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1783671..1794543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD96_RS08515 (BJD96_08400) xerC 1783935..1784825 (-) 891 WP_096810092.1 tyrosine recombinase XerC -
  BJD96_RS08520 (BJD96_08405) trmFO 1784945..1786252 (-) 1308 WP_096810094.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BJD96_RS08525 (BJD96_08410) topA 1786408..1788474 (-) 2067 WP_096810096.1 type I DNA topoisomerase -
  BJD96_RS08530 (BJD96_08415) dprA 1788671..1789543 (-) 873 WP_096810097.1 DNA-processing protein DprA Machinery gene
  BJD96_RS08535 (BJD96_08420) sucD 1789864..1790772 (-) 909 WP_096810099.1 succinate--CoA ligase subunit alpha -
  BJD96_RS08540 (BJD96_08425) sucC 1790794..1791960 (-) 1167 WP_096810101.1 ADP-forming succinate--CoA ligase subunit beta -
  BJD96_RS08545 (BJD96_08430) - 1792068..1792838 (-) 771 WP_096810103.1 ribonuclease HII -
  BJD96_RS08550 (BJD96_08435) ylqF 1792848..1793708 (-) 861 WP_096810105.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33183.40 Da        Isoelectric Point: 9.9980

>NTDB_id=198495 BJD96_RS08530 WP_096810097.1 1788671..1789543(-) (dprA) [Staphylococcus nepalensis strain JS1]
MDINHLYLKLRFAGMTTRQIHQLFNYECDFGSYNKREQQYKLKSYLTKIKSTKKMSIYDNFIKHDIESILLQLDRWKVKF
IGIKNTAYPNLLREIFEPPFILFYKGNLSLAQNEQSLAVVGSRQATSYTNEALRILFPSFKKRNLTIVSGLAEGADKLAH
QHALAHHMPAIAVLGFGHLNHYPKTTYVIRKQLEQKGLVVSEYLPYQKPLKHHFPERNRIISGLSKGVLITESTINSGTS
ITTNCALDQNREVYVLSGSIFNKMTMGNLISAQEGAKIVISAKDIIEDYH

Nucleotide


Download         Length: 873 bp        

>NTDB_id=198495 BJD96_RS08530 WP_096810097.1 1788671..1789543(-) (dprA) [Staphylococcus nepalensis strain JS1]
ATGGACATTAATCATCTATACTTAAAGTTACGCTTTGCAGGAATGACAACGAGACAAATACATCAATTATTTAATTATGA
ATGTGATTTTGGCTCTTATAATAAGAGAGAACAGCAGTATAAGTTGAAATCGTATTTAACTAAAATTAAATCAACGAAAA
AAATGAGTATATATGATAATTTTATTAAGCATGATATCGAATCTATTTTATTACAATTAGATAGGTGGAAAGTAAAATTC
ATCGGGATCAAAAACACTGCGTATCCAAATTTACTCCGTGAAATATTTGAGCCTCCCTTTATACTTTTTTATAAAGGAAA
CCTATCATTGGCACAAAATGAACAAAGTCTTGCGGTTGTTGGTTCTAGGCAAGCTACAAGTTATACAAACGAGGCCTTAA
GGATTCTTTTTCCTTCATTTAAAAAGAGAAATTTAACAATTGTTTCTGGCTTGGCAGAAGGCGCAGATAAATTAGCACAT
CAACACGCTTTAGCGCACCATATGCCTGCAATAGCAGTTTTAGGATTTGGACACTTAAACCATTATCCTAAGACAACATA
CGTTATCAGAAAGCAACTGGAGCAAAAAGGATTAGTCGTTAGCGAATACTTACCATATCAAAAACCACTCAAACATCACT
TTCCAGAAAGAAATAGAATTATTAGTGGTCTATCAAAAGGTGTTTTAATTACAGAATCGACAATCAATAGTGGAACATCT
ATAACAACAAATTGTGCGTTAGATCAAAATAGAGAAGTGTATGTTTTATCAGGTTCAATATTTAATAAAATGACAATGGG
TAATTTAATTAGTGCGCAAGAAGGCGCCAAAATCGTAATATCTGCAAAAGATATCATAGAAGATTATCATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.177

97.586

0.49
  dprA Staphylococcus aureus N315

50.177

97.586

0.49
  dprA Lactococcus lactis subsp. cremoris KW2

35.836

100

0.362

Multiple sequence alignment