Detailed information NTG0198472

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: BJD96_RS00220
• Genome accession: NZ_CP017460
• Coordinates: 43994..45622 (-)
• Length: 542 a.a.
• NCBI ID: WP_096823721.1
• Uniprot ID: -
• Organism: Staphylococcus nepalensis strain JS1
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	45643..46992	43994..45622	flank	21

Gene organization within MGE regions

Location: 43994..46992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD96_RS00220 (BJD96_00215)	ccrB	43994..45622 (-)	1629	WP_096823721.1	cassette chromosome recombinase CcrB	Machinery gene
BJD96_RS00225 (BJD96_00220)	ccrA	45643..46992 (-)	1350	WP_096808037.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62520.45 Da
• Isoelectric Point: 9.6251

>NTDB_id=198472 BJD96_RS00220 WP_096823721.1 43994..45622(-) (ccrB) [Staphylococcus nepalensis strain JS1]
MQQLKQKRVGIYVRVSTEMQSSEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDANKDHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPIGYDTIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAITYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVIAEGKHAPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTSLIFCEKCGATYAASTTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMNQILEIIKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQKQFD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITNQVSQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKVQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1629 bp

>NTDB_id=198472 BJD96_RS00220 WP_096823721.1 43994..45622(-) (ccrB) [Staphylococcus nepalensis strain JS1]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACAGAAATGCAAAGTTCAGAGGGGTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAATCTATGAACCGTCCTGCACTTCAACGTATGTTACATGATGCGAATAAAGATCATATCGATTGTGTTATG
GTGTATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCACAAGAAGGCTATTATCAGGGGAAT
TTACCGATAGGATATGACACAATACCAGATAGTAAGCACGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATCTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTAACTAAAA
AAGGCAACCCTTTTAGTATTTCAGCTATTACTTATATTCTCTCAAATCCATTTTATATCGGCAAAATTCAATTCGCAAAA
TACAAAGATTGGAATGAAAAGCGTCGTAAGGGATTGAATGATAATCCAGTAATTGCTGAAGGTAAACACGCTCCTATTAT
TAGTCAAGAGCTATGGGATAAAGTACAATCACGTAAAAAACAAGTAAGCCAAAAACCCCAAGTACATGGTAAAGGAACAA
ACCTTTTGACGAGCCTAATTTTTTGTGAGAAATGCGGCGCCACATATGCTGCTTCCACTACTACTAATACACTTAAAGAT
GGCACCAAAAAACGCATTCGCTATTATTCATGTAGTAATTTTCGCAATAAAGGGTCAAAAGTGTGTTCCGCGAACAGCGT
ACGAGCTGATGTAATAGAAAAATATGTTATGAATCAGATACTGGAAATTATCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATTGCTTATAAACAAAAACAATTTGAT
GAAGTCCAAATCAAATTAGATAACTTGATAAAAACGCTTGAAGATAATCCAGACTTAACGTCTGTTCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATTACAAACCAAGTCAGTCAACTCAAGCAACAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGTACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (295-360)

• Resolvase, N terminal domain (Resolvase) (11-156)

• Recombinase (Recombinase) (180-280)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	84.871	100	0.849