Detailed information NTG0198473

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: BJD96_RS00225
• Genome accession: NZ_CP017460
• Coordinates: 45643..46992 (-)
• Length: 449 a.a.
• NCBI ID: WP_096808037.1
• Uniprot ID: -
• Organism: Staphylococcus nepalensis strain JS1
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	45643..46992	45643..46992	within	0

Gene organization within MGE regions

Location: 45643..46992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD96_RS00225 (BJD96_00220)	ccrA	45643..46992 (-)	1350	WP_096808037.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52015.73 Da
• Isoelectric Point: 9.9871

>NTDB_id=198473 BJD96_RS00225 WP_096808037.1 45643..46992(-) (ccrA) [Staphylococcus nepalensis strain JS1]
MKQAMGYLRQSTTKQQSLPAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMNKAFDRLKINVFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYN
NGIFMINNTEASTVKAVFSYYLQGYGYKKIAQYLEADEKFINRKPYQVRSIIMNPNYCGRVINQYGQYDNMCPSIVSTSI
YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCGSTLTNITIRKKHRTLRYYVCPQNMNASRFVCEFKGINAQSLEASVLAT
CQDFFQNQQLYSKINHTIQQRLKKQKDIEAKSTLTQEQLIEKLAQCKIDAETFREQTQSLCQQSKPISSIHTHQIRKALQ
NVIQQRFTLNMLYPYIDEIHITKSKTLTGIYFKNEPLNIVNQTAQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=198473 BJD96_RS00225 WP_096808037.1 45643..46992(-) (ccrA) [Staphylococcus nepalensis strain JS1]
ATGAAACAAGCAATGGGTTACTTACGTCAAAGTACAACAAAACAACAATCACTTCCGGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAC
CTAAAAAATGCATTAAAACTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGTGTTCATGATGGTTACTTCGA
CATGAATAAAGCTTTCGATCGGTTGAAGATCAATGTTTTCATCAGTTTGGCTGAACTTGAATCAGATAATATTGGCGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATTACGACCCATGCACCCTTTGGCTATCACTATAAT
AACGGTATTTTCATGATAAACAACACAGAGGCATCAACCGTAAAAGCTGTATTCAGTTATTATCTTCAAGGCTATGGTTA
TAAAAAAATTGCACAGTACTTAGAAGCTGACGAGAAATTCATCAATCGTAAACCCTACCAAGTACGTAGTATTATCATGA
ACCCCAATTATTGTGGTCGAGTCATTAATCAATACGGGCAATATGACAACATGTGTCCTTCTATTGTTTCGACAAGTATA
TATGAACAAGCTCAAGCGATACGGTCACAAAAGCAACTCAAACGGACATCATCAGCTAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTGGTTCAACGTTGACTAATATAACCATTAGAAAAAAGCACCGTACATTACGTTATTATGTCTGTCCAC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGAATCAACGCACAATCATTAGAAGCGAGTGTCTTAGCTACA
TGTCAAGACTTCTTTCAAAATCAACAGTTGTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAAACAAAAAGA
CATAGAAGCTAAAAGTACACTTACGCAAGAACAACTGATAGAAAAATTAGCCCAATGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTATGTCAACAATCCAAACCTATATCATCAATCCATACGCATCAAATTCGAAAGGCTTTACAA
AATGTCATTCAACAACGTTTCACGTTAAACATGTTGTACCCTTACATCGATGAAATTCATATTACCAAAAGTAAAACGCT
TACAGGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACAGCACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase (Recombinase) (169-250)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	85.301	100	0.853
ccrA	Staphylococcus aureus N315	76.169	100	0.762