Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJG88_RS08435 Genome accession   NZ_CP017459
Coordinates   1774014..1774886 (-) Length   290 a.a.
NCBI ID   WP_108909355.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain JS9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1769014..1779886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG88_RS08420 (BJG88_08300) xerC 1769278..1770168 (-) 891 WP_096810092.1 tyrosine recombinase XerC -
  BJG88_RS08425 (BJG88_08305) trmFO 1770288..1771595 (-) 1308 WP_108909353.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BJG88_RS08430 (BJG88_08310) topA 1771751..1773817 (-) 2067 WP_108909354.1 type I DNA topoisomerase -
  BJG88_RS08435 (BJG88_08315) dprA 1774014..1774886 (-) 873 WP_108909355.1 DNA-processing protein DprA Machinery gene
  BJG88_RS08440 (BJG88_08320) sucD 1775207..1776115 (-) 909 WP_096810099.1 succinate--CoA ligase subunit alpha -
  BJG88_RS08445 (BJG88_08325) sucC 1776137..1777303 (-) 1167 WP_096810101.1 ADP-forming succinate--CoA ligase subunit beta -
  BJG88_RS08450 (BJG88_08330) - 1777411..1778181 (-) 771 WP_096810103.1 ribonuclease HII -
  BJG88_RS08455 (BJG88_08335) ylqF 1778191..1779051 (-) 861 WP_096810105.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33179.41 Da        Isoelectric Point: 9.9980

>NTDB_id=198460 BJG88_RS08435 WP_108909355.1 1774014..1774886(-) (dprA) [Staphylococcus nepalensis strain JS9]
MDINHLYLKLRFAGMTTRQIHQLFNYECDFGSYNKREQQYKLKSYLTKIKSTKKMSIYDNFIKHDIESILLQLDRWKVKF
IGIKNTAYPNLLREIFDPPFILFYKGNLSLAQNEQSLAVVGSRQATSYTNEALRILFPSFKKRNLTIVSGLAEGADKLAH
QHALAHHMPAIAVLGFGHLNHYPKTTYVIRKQLEQKGLVVSEYLPYQKPLKHHFPERNRIISGLSKGVLITESTINSGTS
ITTNCALDQNREVYVLPGSIFNKMTMGNLISAQEGAKIVISAKDIIEDYH

Nucleotide


Download         Length: 873 bp        

>NTDB_id=198460 BJG88_RS08435 WP_108909355.1 1774014..1774886(-) (dprA) [Staphylococcus nepalensis strain JS9]
ATGGACATTAATCATCTATACTTAAAGTTACGCTTTGCAGGAATGACAACGAGACAAATACATCAATTATTTAATTATGA
ATGTGATTTTGGCTCTTATAATAAGAGAGAACAGCAGTATAAGTTGAAATCGTATTTAACTAAAATTAAATCAACGAAAA
AAATGAGTATATATGATAATTTTATTAAGCATGATATCGAATCTATTTTATTACAATTAGATAGGTGGAAAGTAAAATTC
ATCGGGATCAAAAACACTGCGTATCCAAATTTACTCCGTGAAATATTTGACCCTCCCTTTATACTTTTTTATAAAGGAAA
CCTATCATTGGCACAAAATGAACAAAGTCTTGCGGTTGTTGGTTCTAGGCAAGCTACAAGTTATACAAACGAGGCCTTAA
GGATTCTTTTTCCTTCATTTAAAAAGAGAAATTTAACAATTGTTTCTGGCTTGGCAGAAGGCGCAGATAAATTAGCACAT
CAACACGCTTTAGCGCACCATATGCCTGCAATAGCAGTTTTAGGATTTGGACACTTAAACCATTATCCTAAGACAACATA
CGTTATCAGAAAGCAACTGGAGCAAAAAGGATTAGTCGTTAGCGAATACTTACCATATCAAAAACCACTCAAACATCACT
TTCCAGAAAGAAATAGAATTATTAGTGGTCTATCAAAAGGTGTTTTAATTACAGAATCGACAATCAATAGTGGAACATCT
ATAACAACAAATTGTGCGTTAGATCAAAATAGAGAAGTGTATGTTTTACCAGGTTCAATATTTAATAAAATGACAATGGG
TAATTTAATTAGTGCGCAAGAAGGCGCCAAAATCGTAATATCTGCAAAAGATATCATAGAAGATTATCATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.53

97.586

0.493
  dprA Staphylococcus aureus N315

50.53

97.586

0.493
  dprA Lactococcus lactis subsp. cremoris KW2

36.177

100

0.366

Multiple sequence alignment