Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   BIZ52_RS09875 Genome accession   NZ_CP017457
Coordinates   2214199..2214942 (-) Length   247 a.a.
NCBI ID   WP_027229195.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209199..2219942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS09850 (BIZ52_09755) - 2209621..2210271 (-) 651 WP_027229190.1 lysoplasmalogenase -
  BIZ52_RS09855 (BIZ52_09760) - 2210353..2210853 (-) 501 WP_027229191.1 hypothetical protein -
  BIZ52_RS09860 (BIZ52_09765) - 2211345..2212205 (+) 861 WP_027229192.1 polysaccharide deacetylase family protein -
  BIZ52_RS09865 (BIZ52_09770) - 2212339..2213535 (-) 1197 WP_027229193.1 murein transglycosylase A -
  BIZ52_RS09870 (BIZ52_09775) lpp1976 2213645..2214202 (-) 558 WP_027229194.1 hypothetical protein Machinery gene
  BIZ52_RS09875 (BIZ52_09780) lpp1977 2214199..2214942 (-) 744 WP_027229195.1 PilW family protein Machinery gene
  BIZ52_RS09880 (BIZ52_09785) lpp1978 2214944..2215258 (-) 315 WP_027229196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BIZ52_RS09885 (BIZ52_09790) hisC 2215419..2216528 (+) 1110 WP_027229197.1 histidinol-phosphate transaminase -
  BIZ52_RS09890 (BIZ52_09795) - 2216566..2216907 (+) 342 WP_027229198.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BIZ52_RS09895 (BIZ52_09800) secF 2217082..2217999 (-) 918 WP_027229199.1 protein translocase subunit SecF -
  BIZ52_RS09900 (BIZ52_09805) secD 2218012..2219868 (-) 1857 WP_027229200.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 29012.72 Da        Isoelectric Point: 9.4014

>NTDB_id=198378 BIZ52_RS09875 WP_027229195.1 2214199..2214942(-) (lpp1977) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MRRQTGFGLSEMLISLFLASIITITLTQIYIRSKPQYLKAQELLEINFDLLWISDLLSNSIRKAGFTPCLSVEKLKTYDS
RHAEREIINFQIENMPQAQLRINRMSDVYTEVINFMSPTQVVIQEPVISNIKHPLIISDCRHAEVHTVSKIDKLTNGYQI
TLKKPLKFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPLIHEFYVARRIVKQRPVLDFTIGSDKEKFRKI
SVSVRNL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=198378 BIZ52_RS09875 WP_027229195.1 2214199..2214942(-) (lpp1977) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGAGAAGACAAACAGGATTTGGTTTATCTGAGATGTTAATTAGTCTTTTCCTGGCAAGTATTATAACGATTACTCTTAC
TCAGATTTATATAAGAAGCAAACCTCAATACCTAAAGGCACAAGAACTGTTAGAAATTAATTTTGATTTGCTGTGGATTA
GCGATTTACTAAGCAACAGTATTAGAAAAGCTGGATTTACTCCGTGTTTAAGTGTCGAGAAATTAAAAACTTATGATTCT
CGACATGCAGAGAGAGAAATAATTAATTTTCAAATTGAAAATATGCCGCAAGCTCAGCTTCGTATCAATAGAATGAGTGA
TGTTTATACGGAAGTGATAAATTTCATGAGCCCAACACAAGTAGTGATTCAAGAGCCAGTAATATCAAATATAAAACATC
CATTAATTATTTCTGACTGCAGGCATGCCGAAGTACATACAGTCTCGAAAATAGATAAGCTCACTAATGGATATCAGATT
ACTTTAAAAAAACCATTGAAGTTCCGGTACGATGAAATTGCTTACCTGGGAGAGTGGCTGGAAGAAACATGGTTTACTAA
ACAAAATGAAAAGGGTGAAAAGACATTGCATTACAAATTGTTTCAAACAGAAGAATTAAGCCCATTAATTCATGAGTTTT
ATGTTGCCAGACGTATTGTCAAACAGAGGCCAGTATTAGATTTTACAATTGGTAGCGATAAGGAAAAATTCCGTAAGATC
AGTGTATCGGTACGAAACTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

88.664

100

0.887
  lpp1977 Legionella pneumophila strain ERS1305867

88.664

100

0.887

Multiple sequence alignment