Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   S100333_RS15305 Genome accession   NZ_CP021892
Coordinates   2866046..2867050 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861046..2872050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS15280 (S100333_03120) acuA 2861956..2862588 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  S100333_RS15285 (S100333_03121) acuB 2862615..2863259 (+) 645 WP_017695491.1 acetoin utilization AcuB family protein -
  S100333_RS15290 (S100333_03122) acuC 2863256..2864437 (+) 1182 WP_088272429.1 acetoin utilization protein AcuC -
  S100333_RS15295 (S100333_03123) motS 2864448..2865176 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  S100333_RS15300 (S100333_03124) motP 2865166..2865983 (-) 818 Protein_2982 flagellar motor protein MotP -
  S100333_RS15305 (S100333_03126) ccpA 2866046..2867050 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  S100333_RS15310 (S100333_03127) aroX 2867326..2868402 (-) 1077 WP_069964250.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  S100333_RS15315 (S100333_03128) ytxJ 2868639..2868965 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  S100333_RS15320 (S100333_03129) ytxH 2868989..2869444 (-) 456 WP_069964251.1 YtxH domain-containing protein -
  S100333_RS15325 (S100333_03130) ytxG 2869475..2869897 (-) 423 WP_088272430.1 DUF948 domain-containing protein -
  S100333_RS15330 (S100333_03131) murC 2870059..2871357 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=198026 S100333_RS15305 WP_003229285.1 2866046..2867050(-) (ccpA) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=198026 S100333_RS15305 WP_003229285.1 2866046..2867050(-) (ccpA) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTTATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503