Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | BI380_RS20350 | Genome accession | NZ_CP017420 |
| Coordinates | 4380383..4380910 (+) | Length | 175 a.a. |
| NCBI ID | WP_043790885.1 | Uniprot ID | - |
| Organism | Delftia tsuruhatensis strain CM13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4375383..4385910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI380_RS20330 (BI380_20330) | sucD | 4376373..4377266 (+) | 894 | WP_016449394.1 | succinate--CoA ligase subunit alpha | - |
| BI380_RS20335 (BI380_20335) | - | 4377432..4378124 (+) | 693 | WP_046238649.1 | TerC family protein | - |
| BI380_RS20340 (BI380_20340) | - | 4378419..4379201 (+) | 783 | WP_017405117.1 | PP2C family protein-serine/threonine phosphatase | - |
| BI380_RS20345 (BI380_20345) | - | 4379450..4380160 (+) | 711 | WP_017405118.1 | FHA domain-containing protein | - |
| BI380_RS20350 (BI380_20350) | pilE | 4380383..4380910 (+) | 528 | WP_043790885.1 | pilin | Machinery gene |
| BI380_RS34425 | - | 4380966..4382858 (+) | 1893 | WP_128422644.1 | hypothetical protein | - |
| BI380_RS33435 | - | 4383538..4384290 (-) | 753 | WP_080945282.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| BI380_RS33440 | - | 4384292..4385599 (-) | 1308 | WP_080945283.1 | FAD-binding oxidoreductase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18285.90 Da Isoelectric Point: 8.9785
>NTDB_id=198013 BI380_RS20350 WP_043790885.1 4380383..4380910(+) (pilE) [Delftia tsuruhatensis strain CM13]
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKISEAVIAGSSVKSMMSEAFQTDSTGGLTAAAVAFNNKPQN
EKTSKYVKNITVTTTDPWDIKVYVAANAGNGIPTGVDGKFITFTPNVQSSAPTASSMGAIDWACASTTKVSAGNRGLKSA
VAGDLPEKYAPSECR
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKISEAVIAGSSVKSMMSEAFQTDSTGGLTAAAVAFNNKPQN
EKTSKYVKNITVTTTDPWDIKVYVAANAGNGIPTGVDGKFITFTPNVQSSAPTASSMGAIDWACASTTKVSAGNRGLKSA
VAGDLPEKYAPSECR
Nucleotide
Download Length: 528 bp
>NTDB_id=198013 BI380_RS20350 WP_043790885.1 4380383..4380910(+) (pilE) [Delftia tsuruhatensis strain CM13]
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATTTTGGCAGCCGT
TGCGCTGCCGGCTTATCAGGATTACACAGTCCGCGCCAAGATTTCTGAAGCGGTAATTGCCGGCTCTTCGGTGAAATCCA
TGATGAGCGAAGCCTTTCAGACCGATAGTACTGGCGGCCTGACAGCCGCCGCCGTGGCATTCAATAACAAGCCGCAGAAT
GAAAAAACTTCCAAGTATGTCAAAAATATCACCGTAACAACCACCGACCCTTGGGACATCAAGGTGTACGTAGCAGCTAA
CGCCGGCAACGGCATTCCAACTGGAGTGGATGGAAAGTTCATCACCTTTACTCCCAATGTCCAAAGCTCTGCCCCGACGG
CATCCTCCATGGGCGCAATTGACTGGGCGTGTGCTTCTACTACCAAGGTGAGCGCAGGAAATCGCGGTCTGAAGTCTGCA
GTTGCTGGCGATTTGCCGGAGAAGTATGCTCCGTCTGAGTGCCGCTAA
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATTTTGGCAGCCGT
TGCGCTGCCGGCTTATCAGGATTACACAGTCCGCGCCAAGATTTCTGAAGCGGTAATTGCCGGCTCTTCGGTGAAATCCA
TGATGAGCGAAGCCTTTCAGACCGATAGTACTGGCGGCCTGACAGCCGCCGCCGTGGCATTCAATAACAAGCCGCAGAAT
GAAAAAACTTCCAAGTATGTCAAAAATATCACCGTAACAACCACCGACCCTTGGGACATCAAGGTGTACGTAGCAGCTAA
CGCCGGCAACGGCATTCCAACTGGAGTGGATGGAAAGTTCATCACCTTTACTCCCAATGTCCAAAGCTCTGCCCCGACGG
CATCCTCCATGGGCGCAATTGACTGGGCGTGTGCTTCTACTACCAAGGTGAGCGCAGGAAATCGCGGTCTGAAGTCTGCA
GTTGCTGGCGATTTGCCGGAGAAGTATGCTCCGTCTGAGTGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
57.754 |
100 |
0.617 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
39.548 |
100 |
0.4 |
| comP | Acinetobacter baylyi ADP1 |
37.912 |
100 |
0.394 |