Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   S100333_RS08765 Genome accession   NZ_CP021892
Coordinates   1676531..1678579 (+) Length   682 a.a.
NCBI ID   WP_029317792.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1671531..1683579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS08735 spoVM 1672167..1672247 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  S100333_RS08740 (S100333_01793) rpmB 1672320..1672508 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  S100333_RS08745 (S100333_01794) yloU 1672785..1673147 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  S100333_RS08750 (S100333_01795) fakA 1673163..1674824 (+) 1662 WP_003232052.1 DAK2 domain-containing protein -
  S100333_RS08755 (S100333_01796) sdaAB 1674963..1675625 (+) 663 WP_003232050.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  S100333_RS08760 (S100333_01797) sdaAA 1675651..1676553 (+) 903 WP_088272318.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  S100333_RS08765 (S100333_01798) recG 1676531..1678579 (+) 2049 WP_029317792.1 ATP-dependent DNA helicase RecG Machinery gene
  S100333_RS08770 (S100333_01799) fapR 1678688..1679254 (+) 567 WP_003232044.1 transcription factor FapR -
  S100333_RS08775 (S100333_01800) plsX 1679268..1680269 (+) 1002 WP_014479768.1 phosphate acyltransferase PlsX -
  S100333_RS08780 (S100333_01801) fabD 1680288..1681241 (+) 954 WP_014479769.1 ACP S-malonyltransferase -
  S100333_RS08785 (S100333_01802) fabG 1681234..1681974 (+) 741 WP_014476789.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  S100333_RS08790 (S100333_01803) acpP 1682058..1682291 (+) 234 WP_003154310.1 acyl carrier protein -
  S100333_RS08795 (S100333_01804) rncS 1682431..1683180 (+) 750 WP_003232030.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 78163.76 Da        Isoelectric Point: 7.4457

>NTDB_id=197976 S100333_RS08765 WP_029317792.1 1676531..1678579(+) (recG) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MKQHQQTSIANIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=197976 S100333_RS08765 WP_029317792.1 1676531..1678579(+) (recG) [Bacillus subtilis subsp. subtilis strain SRCM100333]
GTGAAACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTACACGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTGA
AGCATGATGAAAGAGTTACCGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAATAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATCACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGAAGCTTTC
GCTCGGCTCTGTGGTGACGGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGCATTGAACCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAAGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAACGT
TTTTCAAACGAAGAACTCATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAACCGCCTTCTTCAAGGGGACGTTGGATCAGGAAAAACGGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACGTTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATCGATGAGATGCCGGCTGGACGAAAGAGAATCGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATATTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGGAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.853

100

0.999

  recG/mmsA Streptococcus pneumoniae R6

48.968

99.413

0.487

  recG/mmsA Streptococcus pneumoniae R36A

48.968

99.413

0.487

  recG Neisseria meningitidis strain C311

39.542

96.041

0.38