Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BSBS38_RS12560 | Genome accession | NZ_CP017314 |
| Coordinates | 2351836..2352177 (+) | Length | 113 a.a. |
| NCBI ID | WP_080478414.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain BS38 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2346836..2357177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSBS38_RS12540 (BSBS38_02527) | gcvT | 2347428..2348516 (-) | 1089 | WP_069964209.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BSBS38_RS12545 (BSBS38_02528) | hepAA | 2348958..2350631 (+) | 1674 | WP_014480248.1 | DEAD/DEAH box helicase | - |
| BSBS38_RS12550 (BSBS38_02529) | yqhG | 2350652..2351446 (+) | 795 | WP_014480249.1 | YqhG family protein | - |
| BSBS38_RS12555 (BSBS38_02530) | sinI | 2351629..2351802 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| BSBS38_RS12560 (BSBS38_02531) | sinR | 2351836..2352177 (+) | 342 | WP_080478414.1 | transcriptional regulator SinR | Regulator |
| BSBS38_RS12565 (BSBS38_02532) | tasA | 2352263..2353048 (-) | 786 | WP_014480250.1 | biofilm matrix protein TasA | - |
| BSBS38_RS12570 (BSBS38_02533) | sipW | 2353112..2353684 (-) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| BSBS38_RS12575 (BSBS38_02534) | tapA | 2353668..2354429 (-) | 762 | WP_014480251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BSBS38_RS12580 (BSBS38_02535) | yqzG | 2354701..2355027 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| BSBS38_RS12585 (BSBS38_02536) | spoIITA | 2355069..2355248 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| BSBS38_RS12590 (BSBS38_02537) | comGG | 2355319..2355693 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| BSBS38_RS12595 (BSBS38_02538) | comGF | 2355694..2356077 (-) | 384 | WP_014480254.1 | ComG operon protein ComGF | Machinery gene |
| BSBS38_RS12600 (BSBS38_02539) | comGE | 2356103..2356450 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| BSBS38_RS12605 (BSBS38_02540) | comGD | 2356434..2356865 (-) | 432 | WP_014480256.1 | comG operon protein ComGD | Machinery gene |
| BSBS38_RS12610 (BSBS38_02541) | comGC | 2356855..2357151 (-) | 297 | WP_069964211.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13131.83 Da Isoelectric Point: 9.6072
>NTDB_id=197624 BSBS38_RS12560 WP_080478414.1 2351836..2352177(+) (sinR) [Bacillus subtilis strain BS38]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKRSSA
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKRSSA
Nucleotide
Download Length: 342 bp
>NTDB_id=197624 BSBS38_RS12560 WP_080478414.1 2351836..2352177(+) (sinR) [Bacillus subtilis strain BS38]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAGAGGAGTAGTGCCTGA
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAGAGGAGTAGTGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
96.46 |
0.965 |