Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WH25_RS03570 Genome accession   NZ_CP017295
Coordinates   745288..746019 (+) Length   243 a.a.
NCBI ID   WP_046165133.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 740288..751019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS03540 (WH25_03540) - 740677..742101 (+) 1425 WP_045634230.1 NCS2 family permease -
  WH25_RS03545 (WH25_03545) tsaE 742184..742630 (+) 447 WP_046165129.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  WH25_RS03550 (WH25_03550) - 742630..743154 (+) 525 WP_046165130.1 GNAT family N-acetyltransferase -
  WH25_RS03555 (WH25_03555) brpA 743161..744372 (+) 1212 WP_046165131.1 biofilm formation/cell division transcriptional regulator BrpA -
  WH25_RS03560 (WH25_03560) - 744420..744722 (-) 303 WP_046165132.1 hypothetical protein -
  WH25_RS03565 (WH25_03565) - 744733..745149 (-) 417 WP_045772933.1 HIT family protein -
  WH25_RS03570 (WH25_03570) pptA 745288..746019 (+) 732 WP_046165133.1 ABC transporter ATP-binding protein Regulator
  WH25_RS03575 (WH25_03575) pptB 746016..747071 (+) 1056 WP_046165134.1 ABC transporter permease Regulator
  WH25_RS03580 (WH25_03580) ccrZ 747112..747906 (+) 795 WP_008808544.1 cell cycle regulator CcrZ -
  WH25_RS03585 (WH25_03585) trmB 747903..748538 (+) 636 WP_045772936.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WH25_RS03590 (WH25_03590) rimP 748650..749138 (+) 489 WP_012000044.1 ribosome maturation factor RimP -
  WH25_RS03595 (WH25_03595) nusA 749183..750424 (+) 1242 WP_046165135.1 transcription termination factor NusA -
  WH25_RS03600 (WH25_03600) rnpM 750435..750731 (+) 297 WP_008808548.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26863.31 Da        Isoelectric Point: 4.5658

>NTDB_id=197403 WH25_RS03570 WP_046165133.1 745288..746019(+) (pptA) [Streptococcus gordonii strain IE35]
MLEIKGLTGGYVNIPVLKDVSFEVGDGQLVGLIGLNGAGKSTTINEIIGLLTPYQGEILIDGLSLKSDRTAYRKKIGFIP
ETPSLYEELTLKEHIETVAMAYDIDSQTAMDRVDKLLQIFRLKDKLDWFPVNFSKGMKQKVMIICAFVIDPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLAQLREEFSLPEASLNEIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=197403 WH25_RS03570 WP_046165133.1 745288..746019(+) (pptA) [Streptococcus gordonii strain IE35]
ATGTTAGAAATAAAAGGGCTTACAGGTGGCTATGTCAATATTCCTGTTTTGAAAGATGTCAGTTTTGAAGTTGGAGACGG
TCAGCTTGTTGGACTGATTGGTCTAAACGGGGCTGGAAAGTCAACAACCATCAATGAAATAATCGGTCTCTTGACGCCTT
ATCAAGGAGAAATTTTGATAGATGGTTTGAGCCTGAAGTCAGACAGGACAGCCTATCGCAAAAAGATTGGTTTTATACCT
GAAACACCGAGTCTCTATGAAGAATTAACCTTGAAGGAACATATTGAGACGGTTGCTATGGCTTATGATATTGACTCGCA
AACAGCTATGGATCGAGTGGATAAATTGCTTCAGATCTTCCGTCTTAAAGACAAGTTAGATTGGTTTCCGGTTAATTTCT
CAAAGGGAATGAAGCAGAAGGTTATGATCATCTGTGCCTTTGTGATTGACCCTAGTTTGTTTATTGTGGATGAACCCTTT
TTAGGATTGGATCCTCTGGCCATCTCTGATTTGATTGAGCTCTTGGCAGAAGAAAAGGCTAAAGGGAAGTCTATCCTGAT
GAGTACCCATGTGCTTGATTCGGCAGAGAAAATGTGTGATTCTTTTGTTATCTTGCACAAGGGTCAGGTACGGGCTAAAG
GAAATTTGGCTCAGTTGCGAGAAGAATTTTCATTGCCAGAAGCAAGTCTCAATGAAATCTACCTAGCTTTGACAGAAGAG
GCTGCCCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

98.354

0.737
  pptA Streptococcus thermophilus LMD-9

74.059

98.354

0.728

Multiple sequence alignment