Detailed information NTG0197083

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: BHY08_RS00050
• Genome accession: NZ_CP017267
• Coordinates: 11441..11965 (+)
• Length: 174 a.a.
• NCBI ID: WP_071455936.1
• Uniprot ID: A0A1J0A368
• Organism: Vagococcus teuberi strain DSM 21459
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1752..19453	11441..11965	within	0

Gene organization within MGE regions

Location: 1752..19453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHY08_RS00010 (BHY08_00010)	dnaN	1752..2882 (+)	1131	WP_071455928.1	DNA polymerase III subunit beta	-
BHY08_RS00015 (BHY08_00015)	-	2972..3448 (+)	477	WP_071455929.1	glutathione peroxidase	-
BHY08_RS00020 (BHY08_00020)	yaaA	3796..4029 (+)	234	WP_071455930.1	S4 domain-containing protein YaaA	-
BHY08_RS00025 (BHY08_00025)	recF	4032..5165 (+)	1134	WP_071455931.1	DNA replication/repair protein RecF	-
BHY08_RS00030 (BHY08_00030)	gyrB	5155..7101 (+)	1947	WP_071455932.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
BHY08_RS00035 (BHY08_00035)	gyrA	7119..9632 (+)	2514	WP_071455933.1	DNA gyrase subunit A	-
BHY08_RS00040 (BHY08_00040)	-	9707..10132 (+)	426	WP_071455934.1	hypothetical protein	-
BHY08_RS00045 (BHY08_00045)	rpsF	11098..11397 (+)	300	WP_071455935.1	30S ribosomal protein S6	-
BHY08_RS00050 (BHY08_00050)	ssb	11441..11965 (+)	525	WP_071455936.1	single-stranded DNA-binding protein	Machinery gene
BHY08_RS00055 (BHY08_00055)	rpsR	11985..12224 (+)	240	WP_071455937.1	30S ribosomal protein S18	-
BHY08_RS00060 (BHY08_00060)	rplI	12363..12815 (+)	453	WP_071455938.1	50S ribosomal protein L9	-
BHY08_RS00065 (BHY08_00065)	dnaB	12839..14206 (+)	1368	WP_071455939.1	replicative DNA helicase	-
BHY08_RS00070 (BHY08_00070)	-	14328..15620 (+)	1293	WP_071455940.1	adenylosuccinate synthase	-
BHY08_RS00075 (BHY08_00075)	-	15716..16591 (+)	876	WP_071455941.1	DegV family protein	-
BHY08_RS00080 (BHY08_00080)	-	16710..17159 (+)	450	WP_071455942.1	DUF3290 family protein	-
BHY08_RS00085 (BHY08_00085)	-	17167..17796 (+)	630	WP_071455943.1	DUF421 domain-containing protein	-
BHY08_RS00090 (BHY08_00090)	-	17831..19453 (-)	1623	WP_071455944.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 174 a.a.
• Molecular weight: 19322.93 Da
• Isoelectric Point: 4.5673

>NTDB_id=197083 BHY08_RS00050 WP_071455936.1 11441..11965(+) (ssb) [Vagococcus teuberi strain DSM 21459]
MINNVVLVGRLTRDPDLRYTSNGSAVATFNLAVNRNFTNQSGEREADFVNCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESKNASSQRQQQSGGFDNNAGGFNDFSQNNQNTQSSFGQSSSNDMPNFDRDNSNPFG
NSSSIDISDDDLPF

Nucleotide

• Length: 525 bp

>NTDB_id=197083 BHY08_RS00050 WP_071455936.1 11441..11965(+) (ssb) [Vagococcus teuberi strain DSM 21459]
ATGATTAACAATGTTGTATTGGTAGGTAGACTTACTCGCGACCCAGATTTGAGATATACGTCAAATGGTTCTGCCGTAGC
CACTTTTAACTTGGCTGTTAATCGTAATTTTACTAATCAAAGTGGAGAACGAGAAGCAGATTTTGTTAACTGTGTGATTT
GGAGAAAACCAGCTGAAACTTTAGCAAACTATGCTAAAAAAGGAACTCTTTTAGGAGTTGTTGGTCGTATTCAAACAAGA
AACTACGAGAATCAACAGGGACAAAGAGTGTATGTGACTGAAGTGGTTTGTGAGAATTTCCAATTATTAGAATCTAAAAA
CGCATCAAGTCAAAGACAACAACAATCTGGTGGCTTTGATAACAATGCTGGTGGATTTAATGATTTTTCTCAAAATAATC
AAAATACACAATCATCATTTGGCCAATCTTCAAGTAATGACATGCCGAACTTCGATCGTGATAACAGTAATCCATTTGGA
AACTCATCATCGATAGATATTTCGGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A1J0A368

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.227	100	0.609
ssbA	Bacillus subtilis subsp. subtilis str. 168	56.25	100	0.569
ssbB	Bacillus subtilis subsp. subtilis str. 168	62.264	60.92	0.379