Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   BHS01_RS09365 Genome accession   NZ_CP017195
Coordinates   1914813..1916087 (+) Length   424 a.a.
NCBI ID   WP_109835308.1    Uniprot ID   A0A7L4WGZ7
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1909813..1921087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS09330 (BHS01_09340) - 1910361..1911071 (+) 711 WP_109835305.1 MBL fold metallo-hydrolase -
  BHS01_RS09335 (BHS01_09345) - 1911055..1911477 (+) 423 WP_109835306.1 TetR/AcrR family transcriptional regulator -
  BHS01_RS11260 - 1911483..1911614 (+) 132 WP_162542457.1 TetR-like C-terminal domain-containing protein -
  BHS01_RS09340 (BHS01_09350) - 1911867..1912487 (-) 621 WP_109835307.1 lipoprotein -
  BHS01_RS11265 (BHS01_09355) - 1912786..1913439 (+) 654 WP_191246348.1 hypothetical protein -
  BHS01_RS09360 (BHS01_09365) - 1914103..1914726 (-) 624 WP_109835599.1 YigZ family protein -
  BHS01_RS09365 (BHS01_09370) comFA/cflA 1914813..1916087 (+) 1275 WP_109835308.1 DEAD/DEAH box helicase Machinery gene
  BHS01_RS09370 (BHS01_09375) - 1916288..1916731 (+) 444 WP_162542458.1 ComF family protein -
  BHS01_RS09375 (BHS01_09380) - 1916734..1917135 (-) 402 WP_109835310.1 diacylglycerol kinase family protein -
  BHS01_RS09380 (BHS01_09385) ybeY 1917119..1917610 (-) 492 WP_109835311.1 rRNA maturation RNase YbeY -
  BHS01_RS09385 (BHS01_09390) - 1917613..1918065 (-) 453 WP_109835312.1 HIT family protein -
  BHS01_RS09390 (BHS01_09395) - 1918065..1919048 (-) 984 WP_162542459.1 PhoH family protein -
  BHS01_RS09395 (BHS01_09400) - 1919045..1919236 (-) 192 WP_079507339.1 hypothetical protein -
  BHS01_RS09400 (BHS01_09405) obgE 1919297..1920616 (-) 1320 WP_079507341.1 GTPase ObgE -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47285.92 Da        Isoelectric Point: 9.7416

>NTDB_id=196583 BHS01_RS09365 WP_109835308.1 1914813..1916087(+) (comFA/cflA) [Lactococcus paracarnosus strain TMW 2.1615]
MENLFGRLLTQQELGPDMSLLPQDVTQFAGMAIAGKSVICKRCGTASSCQTVRLEIPAYFCPECLQLGRVRSDEFLYHLP
QQPFPRIDALLWTGTLTPYQADISKQLVQAVDQKKQILVHAVTGAGKTEMIYAAISRSIASGGAVCIATPRTDVARELYM
RLSKDFAVSISLLHADSPPYFRTPLVISTTHQLLRFKEAFDLLIIDEVDAFPFADNPALYYAAKHAQKTAATLVYLTATS
TDTLDKHVSSGLLKRITLSRRFHGHPLVVPKPIFSYPEKIIYRHIQKQRKSGFPLLLFAPVIRFGQSFTAQLSKLFPHEK
IGFVASTTENRSEIISQFREGELTILVSTTILERGVTFPKVDVFVLESQHRLFTASSLIQIAGRAGRSIERPTGLVYFFH
NGLTKQMTRAISDICKMNRLGGFS

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=196583 BHS01_RS09365 WP_109835308.1 1914813..1916087(+) (comFA/cflA) [Lactococcus paracarnosus strain TMW 2.1615]
ATGGAAAACTTATTTGGCCGACTACTCACTCAGCAAGAACTGGGTCCTGATATGTCCCTTTTACCACAGGATGTCACCCA
GTTTGCTGGGATGGCAATAGCAGGAAAGAGCGTCATCTGTAAGCGGTGTGGTACTGCATCCTCTTGCCAAACAGTCCGAC
TTGAAATTCCGGCCTATTTTTGTCCTGAATGTCTGCAACTAGGTCGCGTTAGGTCCGATGAATTTCTCTATCACTTACCG
CAACAGCCTTTCCCAAGGATAGACGCATTACTTTGGACTGGTACACTGACGCCTTATCAAGCAGACATCTCTAAGCAACT
CGTACAGGCAGTGGATCAAAAAAAGCAAATTCTGGTTCATGCGGTAACGGGTGCTGGTAAAACAGAGATGATTTATGCGG
CGATTAGTAGAAGTATTGCTAGTGGTGGTGCTGTTTGTATCGCAACACCTAGAACTGACGTCGCTCGCGAACTATATATG
CGTTTATCTAAAGATTTTGCTGTCTCTATCTCGCTCCTACATGCCGATAGTCCCCCTTACTTTCGCACACCACTTGTTAT
TTCTACAACACACCAGCTTCTCCGATTTAAAGAGGCATTTGATTTATTGATCATCGACGAAGTAGATGCCTTTCCTTTTG
CTGATAACCCTGCACTATACTACGCAGCTAAACATGCACAAAAAACAGCGGCTACTCTAGTTTATCTGACAGCTACCTCT
ACTGATACCCTAGACAAACACGTCAGCTCAGGCCTATTAAAACGAATTACCTTATCTCGTCGCTTTCACGGCCACCCACT
CGTTGTTCCCAAACCAATTTTTAGCTATCCGGAAAAAATCATCTATCGGCATATCCAAAAACAGCGCAAATCCGGATTCC
CCTTATTACTATTTGCACCTGTCATTCGGTTTGGCCAATCATTTACAGCCCAGTTAAGCAAGCTTTTTCCCCACGAGAAG
ATAGGGTTTGTTGCATCGACTACTGAAAATCGCTCTGAGATCATCTCCCAGTTTCGCGAAGGTGAGTTAACGATTCTAGT
TTCTACCACCATATTAGAACGCGGGGTCACTTTTCCGAAAGTTGATGTCTTTGTACTCGAAAGTCAGCACAGACTCTTTA
CAGCCTCTAGTCTGATACAGATTGCTGGACGTGCTGGACGAAGTATTGAGCGGCCGACTGGTCTTGTCTATTTTTTTCAT
AATGGCCTAACAAAGCAGATGACCCGTGCTATTTCTGATATTTGCAAGATGAATCGACTTGGTGGTTTCTCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(95-239)

Helicase conserved C-terminal domain (Helicase_C)

(280-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L4WGZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

54.756

100

0.557
  comFA/cflA Streptococcus pneumoniae Rx1

53.364

100

0.542
  comFA/cflA Streptococcus pneumoniae D39

53.364

100

0.542
  comFA/cflA Streptococcus pneumoniae R6

53.364

100

0.542
  comFA/cflA Streptococcus mitis NCTC 12261

53.132

100

0.54
  comFA/cflA Streptococcus pneumoniae TIGR4

53.132

100

0.54
  comFA Lactococcus lactis subsp. cremoris KW2

55.443

93.16

0.517
  comFA Bacillus subtilis subsp. subtilis str. 168

37.381

99.057

0.37

Multiple sequence alignment