Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BHS01_RS01885 | Genome accession | NZ_CP017195 |
| Coordinates | 360222..360728 (+) | Length | 168 a.a. |
| NCBI ID | WP_109835115.1 | Uniprot ID | A0A7L4WE42 |
| Organism | Lactococcus paracarnosus strain TMW 2.1615 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 355222..365728
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHS01_RS01865 (BHS01_01860) | - | 356139..357365 (+) | 1227 | WP_109835119.1 | MFS transporter | - |
| BHS01_RS01870 (BHS01_01865) | - | 357404..357634 (+) | 231 | WP_109835118.1 | hypothetical protein | - |
| BHS01_RS01875 (BHS01_01870) | - | 357788..359608 (-) | 1821 | WP_109835117.1 | MucBP domain-containing protein | - |
| BHS01_RS01880 (BHS01_01875) | rpsF | 359886..360185 (+) | 300 | WP_109835116.1 | 30S ribosomal protein S6 | - |
| BHS01_RS01885 (BHS01_01880) | ssb | 360222..360728 (+) | 507 | WP_109835115.1 | single-stranded DNA-binding protein | Machinery gene |
| BHS01_RS01890 (BHS01_01885) | rpsR | 360785..361030 (+) | 246 | WP_047914856.1 | 30S ribosomal protein S18 | - |
| BHS01_RS01895 (BHS01_01890) | - | 361150..361461 (-) | 312 | WP_109835114.1 | DUF960 domain-containing protein | - |
| BHS01_RS01900 (BHS01_01895) | - | 361549..362256 (+) | 708 | WP_109835113.1 | pseudouridine synthase | - |
| BHS01_RS01905 (BHS01_01900) | recX | 362253..363047 (-) | 795 | WP_109835112.1 | recombination regulator RecX | - |
| BHS01_RS01910 (BHS01_01905) | - | 363122..363898 (-) | 777 | WP_109835111.1 | MerR family DNA-binding transcriptional regulator | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18199.04 Da Isoelectric Point: 4.8779
>NTDB_id=196561 BHS01_RS01885 WP_109835115.1 360222..360728(+) (ssb) [Lactococcus paracarnosus strain TMW 2.1615]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRTFKNANGEREADFINIVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENPQGQRVYVTEVVADNFQMLESRSARDNGQGGGGYTPSSQPNTANFGGNQASQPQASAATPDFGRDSDPFSGGTPMN
LSDDDLPF
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRTFKNANGEREADFINIVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENPQGQRVYVTEVVADNFQMLESRSARDNGQGGGGYTPSSQPNTANFGGNQASQPQASAATPDFGRDSDPFSGGTPMN
LSDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=196561 BHS01_RS01885 WP_109835115.1 360222..360728(+) (ssb) [Lactococcus paracarnosus strain TMW 2.1615]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTCCGTTACACACCAGCTAACCAAGCAGTCGC
TACGTTTACGCTTGCCGTAAACCGTACCTTTAAAAATGCAAATGGAGAGCGTGAAGCGGATTTCATTAATATCGTCATTT
GGCGTCAAGCTGCGGAAAATCTAGCGAATTGGGCTAAAAAAGGTGCACTTTTAGGTGTTACTGGACGTATCCAAACGAGA
AATTATGAGAATCCACAAGGTCAACGTGTTTACGTAACCGAAGTTGTTGCTGATAATTTCCAAATGCTAGAAAGCCGTTC
AGCTCGCGACAATGGTCAAGGTGGCGGTGGTTATACACCATCATCACAACCAAACACTGCAAACTTCGGTGGCAATCAAG
CATCACAACCACAAGCATCAGCTGCAACACCTGACTTTGGCCGCGATAGCGATCCGTTTTCAGGTGGTACGCCGATGAAC
TTGAGTGATGATGATCTACCATTTTAA
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTCCGTTACACACCAGCTAACCAAGCAGTCGC
TACGTTTACGCTTGCCGTAAACCGTACCTTTAAAAATGCAAATGGAGAGCGTGAAGCGGATTTCATTAATATCGTCATTT
GGCGTCAAGCTGCGGAAAATCTAGCGAATTGGGCTAAAAAAGGTGCACTTTTAGGTGTTACTGGACGTATCCAAACGAGA
AATTATGAGAATCCACAAGGTCAACGTGTTTACGTAACCGAAGTTGTTGCTGATAATTTCCAAATGCTAGAAAGCCGTTC
AGCTCGCGACAATGGTCAAGGTGGCGGTGGTTATACACCATCATCACAACCAAACACTGCAAACTTCGGTGGCAATCAAG
CATCACAACCACAAGCATCAGCTGCAACACCTGACTTTGGCCGCGATAGCGATCCGTTTTCAGGTGGTACGCCGATGAAC
TTGAGTGATGATGATCTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.18 |
100 |
0.595 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.818 |
100 |
0.595 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
63.095 |
0.381 |