Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BHS00_RS08505 Genome accession   NZ_CP017194
Coordinates   1776021..1776527 (-) Length   168 a.a.
NCBI ID   WP_079504929.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1771021..1781527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS08480 (BHS00_08450) - 1772850..1773626 (+) 777 WP_079504937.1 MerR family DNA-binding transcriptional regulator -
  BHS00_RS08485 (BHS00_08455) recX 1773702..1774496 (+) 795 WP_188347866.1 recombination regulator RecX -
  BHS00_RS08490 (BHS00_08460) - 1774493..1775200 (-) 708 WP_188347867.1 pseudouridine synthase -
  BHS00_RS08495 (BHS00_08465) - 1775288..1775599 (+) 312 WP_079504931.1 DUF960 domain-containing protein -
  BHS00_RS08500 (BHS00_08470) rpsR 1775719..1775964 (-) 246 WP_047914856.1 30S ribosomal protein S18 -
  BHS00_RS08505 (BHS00_08475) ssb 1776021..1776527 (-) 507 WP_079504929.1 single-stranded DNA-binding protein Machinery gene
  BHS00_RS08510 (BHS00_08480) rpsF 1776564..1776863 (-) 300 WP_079504927.1 30S ribosomal protein S6 -
  BHS00_RS08515 (BHS00_08485) - 1777137..1777769 (+) 633 WP_079504925.1 rhomboid family intramembrane serine protease -
  BHS00_RS08520 (BHS00_08490) - 1777838..1778605 (-) 768 WP_079504923.1 DUF1295 domain-containing protein -
  BHS00_RS08525 (BHS00_08495) - 1778602..1780410 (-) 1809 WP_188347868.1 DegV family protein -
  BHS00_RS08530 (BHS00_08500) - 1780416..1780820 (-) 405 WP_188347869.1 DUF2177 family protein -
  BHS00_RS08535 (BHS00_08505) - 1781081..1781446 (-) 366 WP_191245636.1 glyoxalase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18229.06 Da        Isoelectric Point: 4.8895

>NTDB_id=196549 BHS00_RS08505 WP_079504929.1 1776021..1776527(-) (ssb) [Lactococcus carnosus strain TMW 2.1612]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRTFKNANGEREADFINIVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENPQGQRVYVTEVVADNFQMLESRSARENGQGGGGYTPSSQPNTANFGGNQSSQPQASAATPDFGRDSDPFSGGTPMN
LSDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=196549 BHS00_RS08505 WP_079504929.1 1776021..1776527(-) (ssb) [Lactococcus carnosus strain TMW 2.1612]
ATGATTAATAATGTTGTTTTAGTAGGTCGGTTGACCAAAGACGTTGAACTTCGTTACACACCAGCTAACCAAGCAGTGGC
GACATTTACGCTTGCCGTAAATCGTACCTTTAAAAATGCAAATGGTGAGCGTGAAGCGGATTTCATTAATATCGTCATTT
GGCGTCAAGCTGCGGAAAATCTAGCAAATTGGGCTAAAAAAGGTGCACTCTTGGGTGTTACTGGACGTATCCAAACGAGA
AATTATGAGAATCCACAAGGTCAACGTGTTTACGTAACCGAAGTCGTGGCTGATAATTTCCAAATGCTAGAAAGCCGTTC
AGCTCGCGAAAATGGTCAAGGTGGCGGTGGTTATACACCATCATCACAACCAAACACTGCAAACTTCGGTGGCAATCAAT
CATCACAACCACAAGCATCAGCTGCAACACCTGATTTTGGACGCGATAGCGACCCGTTTTCAGGAGGTACGCCGATGAAC
TTGAGTGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.303

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.818

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381

Multiple sequence alignment