Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CDG41_RS03895 Genome accession   NZ_CP021774
Coordinates   820731..821375 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain Pa124     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 815731..826375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG41_RS03865 (CDG41_03860) - 816590..817219 (+) 630 WP_023095156.1 glycoside hydrolase family 19 protein -
  CDG41_RS03870 (CDG41_03865) - 817216..817578 (+) 363 WP_003121852.1 hypothetical protein -
  CDG41_RS03875 (CDG41_03870) - 817575..817832 (+) 258 WP_003137395.1 hypothetical protein -
  CDG41_RS03880 (CDG41_03875) - 818180..818785 (+) 606 WP_023091406.1 aminodeoxychorismate/anthranilate synthase component II -
  CDG41_RS03885 (CDG41_03880) trpD 818787..819836 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  CDG41_RS03890 (CDG41_03885) trpC 819833..820669 (+) 837 WP_003142812.1 indole-3-glycerol phosphate synthase TrpC -
  CDG41_RS03895 (CDG41_03890) crp 820731..821375 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  CDG41_RS03900 (CDG41_03895) - 821647..822084 (+) 438 WP_079389562.1 OsmC family protein -
  CDG41_RS03905 (CDG41_03900) - 822126..823352 (+) 1227 WP_010794468.1 IS256-like element ISPa1328 family transposase -
  CDG41_RS03910 (CDG41_03905) speD 823725..824519 (+) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  CDG41_RS03915 (CDG41_03910) coq7 824574..825221 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CDG41_RS03920 (CDG41_03915) - 825321..825659 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=196288 CDG41_RS03895 WP_003085214.1 820731..821375(-) (crp) [Pseudomonas aeruginosa strain Pa124]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=196288 CDG41_RS03895 WP_003085214.1 820731..821375(-) (crp) [Pseudomonas aeruginosa strain Pa124]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTGGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505