Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   CCZ24_RS01025 Genome accession   NZ_CP021773
Coordinates   199408..199917 (+) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 194408..204917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS01000 (CCZ24_00980) - 194427..195296 (+) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -
  CCZ24_RS01005 (CCZ24_00985) - 195431..196627 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  CCZ24_RS01010 (CCZ24_00990) - 196890..197429 (+) 540 WP_000854120.1 aromatic acid exporter family protein -
  CCZ24_RS01015 (CCZ24_00995) - 197509..197880 (+) 372 WP_000664338.1 MerR family transcriptional regulator -
  CCZ24_RS01020 (CCZ24_01000) glnA 197914..199260 (+) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  CCZ24_RS01025 (CCZ24_01005) lytF 199408..199917 (+) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  CCZ24_RS01030 (CCZ24_01010) - 200075..201754 (-) 1680 WP_000065498.1 ribonuclease J -
  CCZ24_RS01035 (CCZ24_01015) - 201808..202038 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  CCZ24_RS01040 (CCZ24_01020) tsaB 202217..202909 (+) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  CCZ24_RS01045 (CCZ24_01025) rimI 202911..203318 (+) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  CCZ24_RS01050 (CCZ24_01030) tsaD 203394..204404 (+) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=196181 CCZ24_RS01025 WP_000392202.1 199408..199917(+) (lytF) [Streptococcus agalactiae strain B105]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=196181 CCZ24_RS01025 WP_000392202.1 199408..199917(+) (lytF) [Streptococcus agalactiae strain B105]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment