Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   BFP66_RS02845 Genome accession   NZ_CP017142
Coordinates   548839..549843 (+) Length   334 a.a.
NCBI ID   WP_069358624.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 543839..554843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS02825 (BFP66_02825) - 544622..545464 (-) 843 WP_024395237.1 DUF975 family protein -
  BFP66_RS02830 (BFP66_02830) tgt 546067..547209 (+) 1143 WP_002935810.1 tRNA guanosine(34) transglycosylase Tgt -
  BFP66_RS02840 (BFP66_02840) - 547544..548629 (-) 1086 WP_024384331.1 M24 family metallopeptidase -
  BFP66_RS02845 (BFP66_02845) ccpA 548839..549843 (+) 1005 WP_069358624.1 catabolite control protein A Regulator
  BFP66_RS11270 - 550273..550368 (-) 96 Protein_507 LPXTG cell wall anchor domain-containing protein -
  BFP66_RS02855 (BFP66_02855) - 550535..551533 (+) 999 WP_014637671.1 glycosyltransferase family 4 protein -
  BFP66_RS02860 (BFP66_02860) - 551534..552847 (+) 1314 WP_024378361.1 glycosyltransferase family 4 protein -
  BFP66_RS02865 (BFP66_02865) - 552862..553236 (+) 375 WP_024378362.1 hypothetical protein -
  BFP66_RS11115 - 553499..553876 (+) 378 Protein_511 MazG-like protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36830.98 Da        Isoelectric Point: 5.3070

>NTDB_id=195949 BFP66_RS02845 WP_069358624.1 548839..549843(+) (ccpA) [Streptococcus suis strain GZ0565]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMDYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=195949 BFP66_RS02845 WP_069358624.1 548839..549843(+) (ccpA) [Streptococcus suis strain GZ0565]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGACTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCACTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGTTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAATGGTGTCAGTGATATGGGCGTCAAGGT
TCCAGAGGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATACGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584

Multiple sequence alignment